Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0472
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1233 + 27224219-27225607                                         29   3.5  
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172...    29   4.7  
02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159...    28   8.2  

>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 198 VRRHLPRLSPYHCRCPGEIWKVLVQD 121
           V RHLPR S    RC  + W+V++ D
Sbjct: 8   VLRHLPRRSLAASRCVCQSWRVIIDD 33


>07_03_0876 -
           22215688-22215789,22216051-22216206,22217227-22217247,
           22217311-22217580,22217793-22219178,22220562-22220621
          Length = 664

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 184 KMTTNPQ*NHLSAGVSKCQMKLSN 255
           + TT PQ  H   G  +CQ+KL N
Sbjct: 8   RRTTTPQRTHSQQGSDRCQLKLEN 31


>02_01_0241 +
           1595188-1595498,1596621-1596654,1596791-1596979,
           1597956-1598045,1598136-1598201,1598680-1598892
          Length = 300

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 658 LVLYYSIKFKVLLNLVFIYPNYDFGNCFYHYT 563
           L+ Y  I F VLL+L+ +    D G  FY+YT
Sbjct: 72  LLGYRLISFFVLLSLLIVIVISDGGTIFYYYT 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,127
Number of Sequences: 37544
Number of extensions: 288662
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)