Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0470
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    31   0.19 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    28   1.3  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   3.0  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   9.2  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.2  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 430 QRDSKLRQWIWRQQFVGQEVLRSTSGTVI 516
           + DS  R W W+ + +GQ VL ++ GT +
Sbjct: 419 KNDSSARTWNWKSKTLGQHVLPTSDGTSV 447


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 132 DYEKAVSDRFPGCMRGRTMYVIPFSMGPVGSPLSKIGVEITIRL 263
           D+EK  S R   C++G T YV      P+G+ L     + T+R+
Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLLVSGSWDETVRI 164


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 10  TRQTLPGLNPARSYAPIGRATWSP 81
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 10  TRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI 135
           TR+ +  L+PA S A IG  T+     P+ +  +   + P +
Sbjct: 202 TRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAGLAAPNM 243


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 34  NPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITR 141
           NP  +  P+     +P   P   PP  TTSP  I R
Sbjct: 228 NPVTT-PPVNNTLLTPPAPPVELPPVTTTSPNAIIR 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,439
Number of Sequences: 5004
Number of extensions: 55069
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)