Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0470
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 103 9e-23
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 83 1e-16
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 81 1e-15
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 31 0.60
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 31 0.79
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 29 2.4
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 3.2
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 4.2
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) 28 5.6
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 28 5.6
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 103 bits (248), Expect = 9e-23
Identities = 48/84 (57%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 TDPADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPD-YEKAVSDRFPGCMRGR 182
TDP DVARVESRTFIC+ + D VP + G+ L ++S + ++K +R+PGCM GR
Sbjct: 71 TDPQDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLYEERYPGCMTGR 129
Query: 183 TMYVIPFSMGPVGSPLSKIGVEIT 254
TMYV+PFSMGPVGSP+SKIG+++T
Sbjct: 130 TMYVLPFSMGPVGSPISKIGIQLT 153
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = +1
Query: 514 IARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLA 636
IA EGWLAEHM+I+G+TNP+GKK YIAAAFPSACGKTNLA
Sbjct: 245 IAHDEGWLAEHMMIMGLTNPEGKKIYIAAAFPSACGKTNLA 285
Score = 71.7 bits (168), Expect = 5e-13
Identities = 47/117 (40%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Frame = +2
Query: 209 GPCGISSLEDWCRNHDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-- 382
GP G + + DS YVV MR+MTR+G+ VL L D FV +H+VG G
Sbjct: 139 GPVGSPISKIGIQLTDSEYVVCCMRIMTRMGSHVLKALG-DGDFVRGVHSVGFPLKEGVK 197
Query: 383 ---WPCDPQNIVVLHKPANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKD-GWL 541
WPCDP+ ++ H PA EI KKCFALR+ S +A D GWL
Sbjct: 198 EVPWPCDPERTLITHFPATREIKSYGSGYGGNSLLGKKCFALRIA--SNIAHDEGWL 252
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/54 (68%), Positives = 45/54 (83%)
Frame = +1
Query: 475 VGQEVLRSTSGTVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLA 636
+G++ +VIAR EGWLAEHM+I+G+TNP+GKK YIAAAFPSACGKTNLA
Sbjct: 102 LGKKCFALRIASVIARDEGWLAEHMMILGLTNPEGKKIYIAAAFPSACGKTNLA 155
Score = 77.0 bits (181), Expect = 1e-14
Identities = 48/117 (41%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Frame = +2
Query: 209 GPCGISSLEDWCRNHDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-- 382
GP G + DS YVV MR+MTR+G+ VL L D FV CLH+VG G
Sbjct: 9 GPVGSPISKIGIELTDSEYVVCCMRIMTRMGSHVLKALG-DGDFVRCLHSVGGPLHDGKN 67
Query: 383 ---WPCDPQNIVVLHKPANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKD-GWL 541
WPCDP+ ++ H P EI KKCFALR+ S +A+D GWL
Sbjct: 68 NVPWPCDPERTLITHFPETREIKSYGSGYGGNSLLGKKCFALRIA--SVIARDEGWL 122
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +3
Query: 186 MYVIPFSMGPVGSPLSKIGVEIT 254
MYV+PFSMGPVGSP+SKIG+E+T
Sbjct: 1 MYVMPFSMGPVGSPISKIGIELT 23
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 80.6 bits (190), Expect = 1e-15
Identities = 47/116 (40%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Frame = +2
Query: 209 GPCGISSLEDWCRNHDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-- 382
GP G + + DS YVV MR+MTR+G+ VL L Q + FV CLH+VG G
Sbjct: 323 GPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGSHVLKALDQGD-FVKCLHSVGKPLKEGEK 381
Query: 383 ---WPCDPQNIVVLHKPANNEIVXXXXXXXXXXXXXKKCFALRLGQ*SPVAKDGWL 541
WPCDP ++ H PA+N I KKCFALR+ + K+GWL
Sbjct: 382 DVLWPCDPDRTIITHFPADNYIKSFGSGYGGNSLLGKKCFALRIAS-NIALKEGWL 436
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = +1
Query: 514 IARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLA 636
IA +EGWLAEHMLI+ +TNP+GKK+YIAAAFPSACGKTNLA
Sbjct: 429 IALKEGWLAEHMLIMALTNPEGKKKYIAAAFPSACGKTNLA 469
Score = 68.1 bits (159), Expect = 6e-12
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Frame = +3
Query: 3 RTDPADVARVESRTFICSDRESDVVPSARAGQKSA---LGNYISPPDYEKAVSDRFPGCM 173
RTDP DVARVES+TFIC++ E D VP + G+ LG ++S +A+ +RFPGCM
Sbjct: 211 RTDPGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCM 270
Query: 174 RGRTMYVIPFSMGPVGSP----LSKIGVEITIRLTWFF 275
+ Y + + V P ++ ++I L+W+F
Sbjct: 271 KACIGYDVYQVLTDVVKPKIIVVAYESLKIKENLSWWF 308
Score = 32.3 bits (70), Expect = 0.34
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +3
Query: 204 SMGPVGSPLSKIGVEIT 254
+MGPVGSP++KIG+++T
Sbjct: 321 NMGPVGSPIAKIGIQLT 337
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +2
Query: 59 SGE-RRGPLGSRRPEVRPGELHLPPG-----LREGRVRQIPWLHERSHNVRDT 199
SGE RRG + + E+R + P G L GRV ++PW ++SH+ DT
Sbjct: 182 SGEPRRGYDSTSQAEIRRSQ-ESPQGGGQESLSRGRVPEVPWYEDQSHHSSDT 233
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -1
Query: 557 TISICSASHPSRRAITVPDVERSTSCPTNCCRHIHCRSLLSRC*PACGVRRCSEGRRASP 378
++S C P+R T P +C + CR S C P C + C G P
Sbjct: 1648 SVSSCKPDCPARCCTTEPLSACPATCSPDSCRPECPLICCSVCPPNCSAQSC--GNFCPP 1705
Query: 377 ECHRIRLREDNEQTAR 330
+C +L +D ++ +
Sbjct: 1706 KCCTSQLSKDRQKECK 1721
>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/66 (37%), Positives = 33/66 (50%)
Frame = +3
Query: 63 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMRGRTMYVIPFSMGPVGSPLSKIG 242
ES P R Q S L N P + + +S+ R R M +I FS+GPVGS L IG
Sbjct: 51 ESSNKPPIRLKQPSQLVNL---PTH-RGMSEGETKATRMRNM-LIEFSLGPVGSTLGAIG 105
Query: 243 VEITIR 260
++ R
Sbjct: 106 PQVIAR 111
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 131 RGGDVVPQGGLLAGASRGDHVALPIG 54
R GDV+P GG + RGD V + IG
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLIG 551
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 91 PARSPPWGTTSPPRITRRPCPTDSLVA--*EVAQC 189
P R P WGTT+ P T C S+V E+++C
Sbjct: 977 PTREPKWGTTAYPTSTFINCSASSVVTFKWEISKC 1011
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 140 EGRVRQIPWLHERSHNVRDTVLDGPCGISSLEDW 241
E ++R++ R + DTV G GI S E W
Sbjct: 304 EEKIRRVKHAKNRRKQISDTVYKGELGIGSYEPW 337
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 19 TLPGLNP-ARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDSL 165
T+P + P + +Y P G AT+ + ++P T PP + P P L
Sbjct: 254 TIPSVPPGSETYVPPGSATYESMDSVNKAPVPPMTPPPAVVTAPPPAPPL 303
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 167 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHV 69
T GHG + + GG V GG AG G HV
Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHV 351
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 25 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 147
P P + P R P P+R+ P TT PPR T P
Sbjct: 1105 PRTTPEPTTEP-SRTKPEPTTEPSRTKPEPTTEPPRTTSEP 1144
>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 302
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -1
Query: 155 VGHGLLVIRGGDVVPQGGLLAGASRGDHVALPIGAYERAGFNPGN 21
VG LL++ GG VV A A H ALP R +PGN
Sbjct: 159 VGVVLLIVNGGVVVGVECTGASAVHESHAALPALPSHRQHTSPGN 203
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 66 SDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM-RGRTMYVIPFSMGPVGS 224
S ++ + G++ LGN++ D E+ + + GC+ G + +P ++ PV +
Sbjct: 435 SRILHALNGGEQRVLGNHVDGYDPERRIIYEYMGCIWHGCSNCYLPDTVNPVNN 488
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 73 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 162
W PRL P P +P I R C T S
Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 45 FICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFP 164
F S+R SD+VP Q ++ I PP + SD P
Sbjct: 546 FCVSNRLSDIVPMGSPAQSPSVFRRIPPPPLPDSESDSSP 585
>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 11 PGRRCPG*IPHVHM-LRSGERRGPLGSRRPEVRPGELHL 124
P PG P + +R G R G RP VRPG+ L
Sbjct: 173 PSLGAPGGRPRIRPEIRPGARPGARPGARPRVRPGDASL 211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,944,499
Number of Sequences: 59808
Number of extensions: 495885
Number of successful extensions: 1544
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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