Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0470
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    56   4e-10
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    27   0.12 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.4  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 55.6 bits (128), Expect = 4e-10
 Identities = 24/28 (85%), Positives = 26/28 (92%)
 Frame = +1

Query: 553 IVGITNPQGKKRYIAAAFPSACGKTNLA 636
           I+ ITNP+GKKRYI AAFPSACGKTNLA
Sbjct: 1   ILAITNPKGKKRYITAAFPSACGKTNLA 28


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 413 VRRCSEGRRASPECHRIRLREDNEQTARLDVEYLE 309
           V+R   G+  SPE  R R     EQ ARL  E+ E
Sbjct: 7   VKRSHNGKNGSPEEKRPRTAFSAEQLARLKREFAE 41


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 410 RRCSEGRRASPECHRIRLREDNEQTARLDVEYLE 309
           R    G   +PE  R R     EQ ARL  E+ E
Sbjct: 8   RSDGRGNGGTPEEKRPRTAFSGEQLARLKREFAE 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,362
Number of Sequences: 438
Number of extensions: 4130
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)