Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0470
(638 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24316.1 68418.m02864 proline-rich family protein contains pr... 30 1.1
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident... 29 2.0
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 2.6
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 3.4
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 28 4.5
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 28 4.5
At4g12070.1 68417.m01919 expressed protein 27 7.9
At3g22270.1 68416.m02815 expressed protein 27 7.9
At3g07530.1 68416.m00899 expressed protein ; expression supporte... 27 7.9
>At5g24316.1 68418.m02864 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 125
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 73 WSPRLAPARSPPWGTTSPPRITRRP 147
WSPR P R P+ PP TRRP
Sbjct: 95 WSPRPIPKRPMPYVPPPPPPPTRRP 119
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -2
Query: 484 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARSATGSDCVKTMNKLLVL 326
L ++TVA + LV +E DDVL++A +A D + T+ K LV+
Sbjct: 175 LQERTVALAKELASLKLVSDLSLEEDDVLKLALLGNNAKTKDTIDTLVKSLVI 227
>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
identical to cyclase-associated protein (cap1)
GI:3169136 from [Arabidopsis thaliana]
Length = 476
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 22 LPGLNP-ARSYAPIG---RATWSPRLAPARSPPWGTTSPP 129
LPGL +S+ P+G A+ P APA+ PP PP
Sbjct: 202 LPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 1 PGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 147
P + P P S +P T +P P+ SPP T SPP T P
Sbjct: 107 PAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSP 155
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 1 PGQTRQTLPGLNPAR--SYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDS 162
P + P +PA S++P + SP AP+ SP + P + P P+ S
Sbjct: 229 PSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSS 284
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 159
G T Q P P + AP T P P +PP TTSPP +T P P +
Sbjct: 17 GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 159
G T Q P P + AP T P P +PP TTSPP +T P P +
Sbjct: 17 GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69
>At4g12070.1 68417.m01919 expressed protein
Length = 483
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 21 VARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDR 158
V RV + SD + +VP+ AG++ + I P+Y SDR
Sbjct: 86 VVRVRRGSDDFSDLSACIVPNESAGKRQYMLRSIDDPNYTVGFSDR 131
>At3g22270.1 68416.m02815 expressed protein
Length = 782
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 77 PLGSRRPEVRPGELHLPPGLREG 145
P G+R P+ PG LH P L G
Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGG 209
>At3g07530.1 68416.m00899 expressed protein ; expression supported
by MPSS
Length = 699
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 200 VLDGPCGISSLEDWCRNHDSPYVVFSMRVMTRIGAKVL-DILRQDEQFVHCLHAVGSGGT 376
++ P G+ L +N ++ V +IG ++ DI+ ++F C H +
Sbjct: 107 LISNPMGLLGLPFLTQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEF-RCFHGPDNSSF 165
Query: 377 PGW 385
PGW
Sbjct: 166 PGW 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,967
Number of Sequences: 28952
Number of extensions: 324973
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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