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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0470
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24316.1 68418.m02864 proline-rich family protein contains pr...    30   1.1  
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    30   1.1  
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    29   2.0  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    29   2.6  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    29   3.4  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    28   4.5  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    28   4.5  
At4g12070.1 68417.m01919 expressed protein                             27   7.9  
At3g22270.1 68416.m02815 expressed protein                             27   7.9  
At3g07530.1 68416.m00899 expressed protein ; expression supporte...    27   7.9  

>At5g24316.1 68418.m02864 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 125

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 73  WSPRLAPARSPPWGTTSPPRITRRP 147
           WSPR  P R  P+    PP  TRRP
Sbjct: 95  WSPRPIPKRPMPYVPPPPPPPTRRP 119


>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 484 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARSATGSDCVKTMNKLLVL 326
           L ++TVA      +  LV    +E DDVL++A    +A   D + T+ K LV+
Sbjct: 175 LQERTVALAKELASLKLVSDLSLEEDDVLKLALLGNNAKTKDTIDTLVKSLVI 227


>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 22  LPGLNP-ARSYAPIG---RATWSPRLAPARSPPWGTTSPP 129
           LPGL    +S+ P+G    A+  P  APA+ PP     PP
Sbjct: 202 LPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 1   PGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 147
           P   +   P   P  S +P    T +P   P+ SPP  T SPP  T  P
Sbjct: 107 PAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSP 155


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 1   PGQTRQTLPGLNPAR--SYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDS 162
           P  +    P  +PA   S++P    + SP  AP+ SP    +  P   + P P+ S
Sbjct: 229 PSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSS 284


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 4   GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 159
           G T Q  P   P  + AP    T  P   P    +PP  TTSPP +T  P P +
Sbjct: 17  GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 4   GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 159
           G T Q  P   P  + AP    T  P   P    +PP  TTSPP +T  P P +
Sbjct: 17  GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69


>At4g12070.1 68417.m01919 expressed protein
          Length = 483

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 21  VARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDR 158
           V RV   +   SD  + +VP+  AG++  +   I  P+Y    SDR
Sbjct: 86  VVRVRRGSDDFSDLSACIVPNESAGKRQYMLRSIDDPNYTVGFSDR 131


>At3g22270.1 68416.m02815 expressed protein
          Length = 782

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 77  PLGSRRPEVRPGELHLPPGLREG 145
           P G+R P+  PG LH  P L  G
Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGG 209


>At3g07530.1 68416.m00899 expressed protein ; expression supported
           by MPSS
          Length = 699

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 200 VLDGPCGISSLEDWCRNHDSPYVVFSMRVMTRIGAKVL-DILRQDEQFVHCLHAVGSGGT 376
           ++  P G+  L    +N      ++   V  +IG  ++ DI+   ++F  C H   +   
Sbjct: 107 LISNPMGLLGLPFLTQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEF-RCFHGPDNSSF 165

Query: 377 PGW 385
           PGW
Sbjct: 166 PGW 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,967
Number of Sequences: 28952
Number of extensions: 324973
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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