BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0470 (638 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g24316.1 68418.m02864 proline-rich family protein contains pr... 30 1.1 At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 30 1.1 At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident... 29 2.0 At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 2.6 At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 3.4 At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 28 4.5 At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 28 4.5 At4g12070.1 68417.m01919 expressed protein 27 7.9 At3g22270.1 68416.m02815 expressed protein 27 7.9 At3g07530.1 68416.m00899 expressed protein ; expression supporte... 27 7.9 >At5g24316.1 68418.m02864 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 125 Score = 30.3 bits (65), Expect = 1.1 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +1 Query: 73 WSPRLAPARSPPWGTTSPPRITRRP 147 WSPR P R P+ PP TRRP Sbjct: 95 WSPRPIPKRPMPYVPPPPPPPTRRP 119 >At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 506 Score = 30.3 bits (65), Expect = 1.1 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -2 Query: 484 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARSATGSDCVKTMNKLLVL 326 L ++TVA + LV +E DDVL++A +A D + T+ K LV+ Sbjct: 175 LQERTVALAKELASLKLVSDLSLEEDDVLKLALLGNNAKTKDTIDTLVKSLVI 227 >At4g34490.1 68417.m04903 cyclase-associated protein (cap1) identical to cyclase-associated protein (cap1) GI:3169136 from [Arabidopsis thaliana] Length = 476 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = +1 Query: 22 LPGLNP-ARSYAPIG---RATWSPRLAPARSPPWGTTSPP 129 LPGL +S+ P+G A+ P APA+ PP PP Sbjct: 202 LPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241 >At5g38560.1 68418.m04662 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 681 Score = 29.1 bits (62), Expect = 2.6 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = +1 Query: 1 PGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 147 P + P P S +P T +P P+ SPP T SPP T P Sbjct: 107 PAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSP 155 >At5g53870.1 68418.m06701 plastocyanin-like domain-containing protein contains similarity to SP|Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain Length = 370 Score = 28.7 bits (61), Expect = 3.4 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = +1 Query: 1 PGQTRQTLPGLNPAR--SYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDS 162 P + P +PA S++P + SP AP+ SP + P + P P+ S Sbjct: 229 PSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSS 284 >At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to gi|10880495|gb|AAG24277 Length = 176 Score = 28.3 bits (60), Expect = 4.5 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +1 Query: 4 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 159 G T Q P P + AP T P P +PP TTSPP +T P P + Sbjct: 17 GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69 >At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to gi|10880495|gb|AAG24277 Length = 191 Score = 28.3 bits (60), Expect = 4.5 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +1 Query: 4 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 159 G T Q P P + AP T P P +PP TTSPP +T P P + Sbjct: 17 GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69 >At4g12070.1 68417.m01919 expressed protein Length = 483 Score = 27.5 bits (58), Expect = 7.9 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 21 VARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDR 158 V RV + SD + +VP+ AG++ + I P+Y SDR Sbjct: 86 VVRVRRGSDDFSDLSACIVPNESAGKRQYMLRSIDDPNYTVGFSDR 131 >At3g22270.1 68416.m02815 expressed protein Length = 782 Score = 27.5 bits (58), Expect = 7.9 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 77 PLGSRRPEVRPGELHLPPGLREG 145 P G+R P+ PG LH P L G Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGG 209 >At3g07530.1 68416.m00899 expressed protein ; expression supported by MPSS Length = 699 Score = 27.5 bits (58), Expect = 7.9 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = +2 Query: 200 VLDGPCGISSLEDWCRNHDSPYVVFSMRVMTRIGAKVL-DILRQDEQFVHCLHAVGSGGT 376 ++ P G+ L +N ++ V +IG ++ DI+ ++F C H + Sbjct: 107 LISNPMGLLGLPFLTQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEF-RCFHGPDNSSF 165 Query: 377 PGW 385 PGW Sbjct: 166 PGW 168 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,955,967 Number of Sequences: 28952 Number of extensions: 324973 Number of successful extensions: 1019 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 934 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1014 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1314848736 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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