Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0468
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0342 - 2691294-2691441,2691589-2691667,2691737-2691799,269...    30   1.7  
07_03_0224 + 15385572-15385747,15386311-15386383,15387310-153876...    28   9.3  

>05_01_0342 -
           2691294-2691441,2691589-2691667,2691737-2691799,
           2692852-2692917,2694939-2695004,2695194-2695283,
           2695376-2695463,2695552-2695629,2695732-2695824,
           2695907-2696024,2696418-2696539,2696633-2696930,
           2697645-2697649
          Length = 437

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 668 IKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
           +K + EGSI+ ++  + +GD IE LNGE +
Sbjct: 179 VKEVSEGSILEKLG-VRIGDIIECLNGERI 207


>07_03_0224 +
           15385572-15385747,15386311-15386383,15387310-15387658,
           15387814-15387860,15387948-15388025,15388328-15388398,
           15388514-15388601
          Length = 293

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +2

Query: 593 KEIEIVKTEDALGLTITD----NGAGYAFIKRIKEGSIVSRIP 709
           + +EI+ +E  + + ITD       GY  +K+IKE S + +IP
Sbjct: 208 RALEILGSEPNVSMIITDYWMPEMTGYDLLKKIKESSELKQIP 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,844,852
Number of Sequences: 37544
Number of extensions: 367725
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)