Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0468
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_52290| Best HMM Match : PDZ (HMM E-Value=8.6e-18) 35 0.083
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 32 0.58
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) 32 0.58
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 32 0.58
SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7) 32 0.58
SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07) 32 0.58
SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18) 32 0.58
SB_22623| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 32 0.58
SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7) 32 0.58
SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36) 32 0.58
SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32) 32 0.58
SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32) 32 0.58
SB_55857| Best HMM Match : STN (HMM E-Value=6) 32 0.58
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11) 32 0.58
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 32 0.58
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6) 31 1.4
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33) 31 1.4
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 31 1.4
SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3) 31 1.4
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36) 31 1.4
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12) 31 1.4
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 31 1.4
SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18) 31 1.4
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21) 31 1.4
SB_45989| Best HMM Match : TFIIE_alpha (HMM E-Value=5) 30 1.8
SB_8291| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_46923| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 5.5
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.2
SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) 28 9.5
SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1) 28 9.5
>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 126 bits (305), Expect = 1e-29
Identities = 58/95 (61%), Positives = 74/95 (77%)
Frame = +2
Query: 476 FTRRYSFLYFKTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGA 655
F R F T++VDM++LLGGQIGL+DFIFAH KG+ K +E+VK + ALGLTITDNGA
Sbjct: 233 FCRLILFCTLNTYRVDMERLLGGQIGLDDFIFAHIKGQKKIVEVVKDQPALGLTITDNGA 292
Query: 656 GYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENMV 760
G AF+KRIKEGSI + P I +GDH+E +NG+ +V
Sbjct: 293 GCAFVKRIKEGSIADKTPQICIGDHVEYINGQYVV 327
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 35.5 bits (78), Expect = 0.047
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 545 QIGLEDFIFAHRKGRPKE-----IEIVKTEDALGLTIT---DNGAGYAFIKRIKEGSIVS 700
Q L++ I A +G E I+++K + +GL + D G +IK I+ G+
Sbjct: 2267 QTSLQELINARNEGAEIEEGILSIQLLKEDQGIGLMVIGGLDTPLGMLYIKDIQPGTPAE 2326
Query: 701 RIPHIEVGDHIEKLNGENMV 760
+ H+ GD + ++N E +V
Sbjct: 2327 KCGHLRTGDQLLQVNDECLV 2346
>SB_52290| Best HMM Match : PDZ (HMM E-Value=8.6e-18)
Length = 124
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 587 RPKEIEIVKTEDALGLTITDN-GAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
+P E+ ++K LG+++T G +IKR+ G + ++V D I ++NG+++
Sbjct: 7 QPFEVHLIKGPQGLGMSLTGGESGGPIYIKRLVPGGSAALCGQLQVNDVILQVNGKSL 64
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 646 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 690
>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
Length = 615
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 243 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 287
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 693 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 737
>SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 252
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 75 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 119
>SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07)
Length = 409
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 104 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 148
>SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)
Length = 802
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 590 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 634
>SB_22623| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 391
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 272 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 316
>SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 225
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 48 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 92
>SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 748
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 248 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 292
>SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 546
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 75 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 119
>SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 517
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 75 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 119
>SB_55857| Best HMM Match : STN (HMM E-Value=6)
Length = 262
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 143 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 187
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 794 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 838
>SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11)
Length = 512
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 203 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 247
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 669 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 713
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 665 FIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
FIK I GS+ + VGD I K+NGE++
Sbjct: 1936 FIKTISPGSVAEEDGRLRVGDQILKVNGEDV 1966
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 89 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 133
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 31.5 bits (68), Expect = 0.77
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +2
Query: 452 EDSRMLRIFTRRYSFLYFKTHKVDMKKLL--GGQIGLEDFIFAHRKGRPKEIEIVKTEDA 625
ED +M++I R + K+ M +L G Q ++ + +R+ R I+
Sbjct: 422 EDPQMVKILAREF--------KIHMNRLFTSGEQKYIKQCLMDYRRDRSVPIKRGGPGAG 473
Query: 626 LGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
G T+T N ++ + +GS ++ ++ GDHI ++NG N+
Sbjct: 474 FGFTLTGNAP--VCVRSVDKGSPAAQA-RLKPGDHILEINGLNV 514
>SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)
Length = 360
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
KE+E+VK+ LGLTI+DN + A + + + S
Sbjct: 129 KELEVVKSTKLLGLTISDNLSWNAHVNEVVKKS 161
>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
Length = 718
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
K + I K+ D LG T+ N G I RI +G + + GD I ++NG +M
Sbjct: 446 KIVRIDKSCDPLGATVK-NEDGAVLIGRIVKGGAAEKSGLLHEGDEILEINGVHM 499
>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
KE+E+VK+ LGLTI+DN + A + + + S
Sbjct: 547 KELEVVKSTKLLGLTISDNLSWNAHVNEVVKKS 579
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 665 FIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
++K I G + S +E+GD+I K+NG+++
Sbjct: 504 YVKDISFGGVASEQKSLEIGDYILKMNGKHL 534
>SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3)
Length = 360
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ A + P E+E ++ AL T++ NG AF R +GS
Sbjct: 118 EAFVSAIDESIPFEVETDASDVALAATLSQNGRPVAFFSRALQGS 162
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
KE+E+VK+ LGLTI+DN + A + + + S
Sbjct: 395 KELEVVKSTKLLGLTISDNLSWNAHVNEVVKKS 427
>SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 1048
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 563 FIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 695 FVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 737
>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
Length = 642
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
KE+E+VK+ LGLTI+DN + A + + + S
Sbjct: 465 KELEVVKSTKLLGLTISDNLSWNAHVNEVVKKS 497
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 557 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
E F+ + + P E+E +E AL T++ NG AF R +GS
Sbjct: 693 EAFVSSIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 737
>SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18)
Length = 379
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
KE+E+VK+ LGLTI+DN + A + + + S
Sbjct: 202 KELEVVKSTKLLGLTISDNLSWNAHVNEVVKKS 234
>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
KE+E+VK+ LGLTI+DN + A + + + S
Sbjct: 113 KELEVVKSTKLLGLTISDNLSWNAHVNEVVKKS 145
>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
Length = 1032
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 563 FIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEGS 691
F+ A + P E+E +E AL T++ NG AF R +GS
Sbjct: 311 FVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQGS 353
>SB_45989| Best HMM Match : TFIIE_alpha (HMM E-Value=5)
Length = 194
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRI 679
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 20 KELEVVKSTKLLGLTISDNLSWNAHVNEV 48
>SB_8291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFI----KRIKEGSI 694
KEIE+V + LGLT+T+N G + KR+ +GSI
Sbjct: 77 KEIEVVTSVKLLGLTLTNNLIGTTMLLRSRKRLVKGSI 114
>SB_46923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFI----KRIKEGSI 694
KEIE+V + LGLT+T+N G + KR+ +GSI
Sbjct: 128 KEIEVVTSVKLLGLTLTNNLIGTTMLLRSRKRLVKGSI 165
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 187 MCADCRFC*KKNTAVIKCSYTMSYLKRKRLNTRRH-RYHPHQ*KILNHSLMESI-IATVR 360
M A C FC N + KCS S + + R H ++H K HS + ++T
Sbjct: 4 MDAKCEFCYATNVQLQKCSRCKSTMYCSKDCPRSHWKHHKAICKAKKHSKDSKLDVSTTT 63
Query: 361 RSHNWSSTVSKLTEVHWASSLVSLTSKNY 447
+S +SK +E + LT N+
Sbjct: 64 APLRFSQPMSKNSETLANFVVEELTKSNF 92
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGSIVSRI 706
K+IE VKT LGLTI+D+ A I + + SR+
Sbjct: 1988 KDIEAVKTAKLLGLTISDDLKWNAHISEVTR-KVASRL 2024
>SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)
Length = 633
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 328 SLMESIIATVRRSHNWSSTVSKLTEVHWASSLVSLTSKNY 447
SL+ + R HN SS +++ + + SSL++ TS+ Y
Sbjct: 385 SLLTRTLRKTMRKHNTSSLLTRTSRKYNKSSLLTRTSRKY 424
>SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 568 NKVF*SYLPSE--KFFHIHFVSFKVQKRISSGENS*HSAIFSYNSLTLEK 425
++V+ YLP KFF F +F+ +RISS +S + Y S + K
Sbjct: 27 SRVYYKYLPDRISKFFASSFHTFENLRRISSDRHSFSRVYYKYLSNRISK 76
>SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
Length = 279
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 340 SIIATVRRSHNWSSTVSKLTEVHWASSLVSLTSKNY 447
S++ R HN SS +++ + + SSL++ TS+ Y
Sbjct: 35 SLLTRTMRKHNTSSLLTRTSRKYNKSSLLTRTSRKY 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,284
Number of Sequences: 59808
Number of extensions: 455513
Number of successful extensions: 1180
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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