Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0468
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68298-3|CAA92600.2| 357|Caenorhabditis elegans Hypothetical pr... 81 1e-15
U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical p... 75 6e-14
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 40 0.003
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 40 0.003
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 40 0.003
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 37 0.014
U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily ass... 36 0.041
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 33 0.17
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 33 0.17
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 33 0.17
Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical p... 32 0.39
DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein. 32 0.39
AL034488-16|CAN99708.1| 317|Caenorhabditis elegans Hypothetical... 32 0.51
U78092-1|AAB36684.1| 297|Caenorhabditis elegans LIN-7 protein. 30 2.1
AL034488-17|CAA22459.2| 316|Caenorhabditis elegans Hypothetical... 30 2.1
AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical ... 29 3.6
Z82279-2|CAB05260.2| 256|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z66511-1|CAA91314.1| 537|Caenorhabditis elegans Hypothetical pr... 28 8.3
U50309-5|AAG24135.1| 339|Caenorhabditis elegans Seven tm recept... 28 8.3
AY151209-1|AAN72826.1| 256|Caenorhabditis elegans COG-1A protein. 28 8.3
>Z68298-3|CAA92600.2| 357|Caenorhabditis elegans Hypothetical
protein F44D12.4 protein.
Length = 357
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +2
Query: 494 FLYFKTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIK 673
FL K DMK + G + +D +FAH +G+ E+ +VK + G+T+TDNG G AFIK
Sbjct: 104 FLTVNDFKPDMKNMFSGTLNFKDMLFAHVRGQATELRMVKDANVFGVTVTDNGLGNAFIK 163
Query: 674 RIKEGSIVSRI-PHIEVGDHIEKLNGENMV 760
I GS+ R+ P +VG IE +NGE+++
Sbjct: 164 VISPGSVFDRMRPATQVGQLIEAINGESVL 193
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 312 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 491
E+ S V N +L F CQ AHGSP+ +I +++++ELY+ IA+ + S +DI
Sbjct: 43 EEPSSSIMPVVNPLMVAAKELKFPCQLAHGSPVAIIDKWNDMEELYQSIADFFAISKDDI 102
Query: 492 LFCTLKLTKWI*KNFSEG 545
+F T+ K KN G
Sbjct: 103 IFLTVNDFKPDMKNMFSG 120
>U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical
protein C35D10.2 protein.
Length = 357
Score = 74.9 bits (176), Expect = 6e-14
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 494 FLYFKTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIK 673
FL K DMK + G + +D +FAH +G+ E+ +VK G+TITDNG G AFIK
Sbjct: 104 FLTVNDFKPDMKNMFTGTLNFKDMLFAHIRGQATELRVVKDAKNFGVTITDNGLGNAFIK 163
Query: 674 RIKEGSIVSRI-PHIEVGDHIEKLNGE 751
I S+ R+ P +VG IE +NGE
Sbjct: 164 VISPDSVFDRMRPATQVGQLIEAVNGE 190
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/78 (41%), Positives = 46/78 (58%)
Frame = +3
Query: 312 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 491
E++ S V N QL F CQ AHGSP+G+I ++N++ELY+ IA+C+ S +DI
Sbjct: 43 EESSSTIMTVVNPLMVAARQLKFACQMAHGSPVGIIDKWNNMEELYQSIADCFTISKDDI 102
Query: 492 LFCTLKLTKWI*KNFSEG 545
+F T+ K KN G
Sbjct: 103 IFLTVNDFKPDMKNMFTG 120
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 614 TEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNG 748
T++ +G+T+ N G F+ RI G ++ R + VGD I ++NG
Sbjct: 212 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIREING 256
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 614 TEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNG 748
T++ +G+T+ N G F+ RI G ++ R + VGD I ++NG
Sbjct: 553 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIREING 597
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 614 TEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNG 748
T++ +G+T+ N G F+ RI G ++ R + VGD I ++NG
Sbjct: 212 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIREING 256
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 614 TEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNG 748
T++ +G+T+ N G F+ RI G ++ R + VGD I ++NG
Sbjct: 553 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIREING 597
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 37.1 bits (82), Expect = 0.014
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 566 IFAHRKGRP-KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKL 742
++A K R EI+I K + G TI DN G +RIK+ S+ P++ GD I +L
Sbjct: 564 VYAAAKSRDLHEIDIFKGSEGFGFTIADNLNG----QRIKKILFPSQCPNLMEGDTIVEL 619
Query: 743 NGENM 757
+G N+
Sbjct: 620 DGRNV 624
>U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily
assigned gene nameprotein 117 protein.
Length = 668
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 593 KEIEIVKTEDA-LGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
K +E+VK ED+ LG T+ N + R+ +G IV ++ + GD + +LNG ++
Sbjct: 234 KVVEVVKDEDSYLGATVR-NENNKIIVGRVVKGGIVEKMNLFQEGDELLELNGSSL 288
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 641 TDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
TD G AFI ++K GS+ I + GD + + NG+++
Sbjct: 668 TDTGKLGAFITQVKPGSVADTIGRLRPGDEVVEWNGQSL 706
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 641 TDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
TD G AFI ++K GS+ I + GD + + NG+++
Sbjct: 668 TDTGKLGAFITQVKPGSVADTIGRLRPGDEVVEWNGQSL 706
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 641 TDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENM 757
TD G AFI ++K GS+ I + GD + + NG+++
Sbjct: 668 TDTGKLGAFITQVKPGSVADTIGRLRPGDEVVEWNGQSL 706
>Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 629 GLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENMV 760
GL I + G I IKEGS I+ GD I +NG +V
Sbjct: 275 GLNIQSSYRGVHVISEIKEGSPADACTKIDAGDEILMINGRTVV 318
>Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 629 GLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENMV 760
GL I + G I IKEGS I+ GD I +NG +V
Sbjct: 275 GLNIQSSYRGVHVISEIKEGSPADACTKIDAGDEILMINGRTVV 318
>DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein.
Length = 801
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 629 GLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNGENMV 760
GL I + G I IKEGS I+ GD I +NG +V
Sbjct: 275 GLNIQSSYRGVHVISEIKEGSPADACTKIDAGDEILMINGRTVV 318
>AL034488-16|CAN99708.1| 317|Caenorhabditis elegans Hypothetical
protein Y54G11A.10a protein.
Length = 317
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 563 FIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYA--FIKRIKEGSIVSRIPHIEVGDHIE 736
F A P+ +E+ KT+ LG + + +I RI G + R ++ GD +
Sbjct: 189 FAAAEGHAHPRIVELPKTDQGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLI 248
Query: 737 KLNGENM 757
+NG N+
Sbjct: 249 AVNGVNV 255
>U78092-1|AAB36684.1| 297|Caenorhabditis elegans LIN-7 protein.
Length = 297
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 563 FIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYA--FIKRIKEGSIVSRIPHIEVGDHIE 736
F A P+ +E+ KT+ LG + + +I RI G + R ++ GD +
Sbjct: 189 FAAAEGHAHPRIVELPKTDQGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLI 248
Query: 737 KLNG 748
+NG
Sbjct: 249 AVNG 252
>AL034488-17|CAA22459.2| 316|Caenorhabditis elegans Hypothetical
protein Y54G11A.10b protein.
Length = 316
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 563 FIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYA--FIKRIKEGSIVSRIPHIEVGDHIE 736
F A P+ +E+ KT+ LG + + +I RI G + R ++ GD +
Sbjct: 189 FAAAEGHAHPRIVELPKTDQGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLI 248
Query: 737 KLNG 748
+NG
Sbjct: 249 AVNG 252
>AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical
protein Y55B1BR.4 protein.
Length = 567
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 593 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGSIVSRIPHIEVGDHIEKLNG 748
K + IV+ + LG TI G ++ RI + R I+ GD + ++NG
Sbjct: 129 KIVRIVRRGEPLGATIKCE-RGKVYVARIMANGVADRSGCIQEGDRVLEVNG 179
>Z82279-2|CAB05260.2| 256|Caenorhabditis elegans Hypothetical
protein R03C1.3a protein.
Length = 256
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 478 ENS*HSAIFSYNSLTLEKPEMRPNG 404
EN HS+ +S ++L LEK E P+G
Sbjct: 20 ENRKHSSTYSISNLLLEKKESSPSG 44
>Z66511-1|CAA91314.1| 537|Caenorhabditis elegans Hypothetical
protein F07A11.1 protein.
Length = 537
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 518 VDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDA 625
++MKK LE++IF H R +++E+ +DA
Sbjct: 257 IEMKKRRPKSPVLENYIFRHESPRSRDVEVRTRKDA 292
>U50309-5|AAG24135.1| 339|Caenorhabditis elegans Seven tm receptor
protein 90 protein.
Length = 339
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 299 WYRWRRVFRRFLFK*DIVYEHFITAVFF 216
W+ W FLF +I +E +ITAV F
Sbjct: 123 WFMWPHAIVWFLFCSEISFEWWITAVLF 150
>AY151209-1|AAN72826.1| 256|Caenorhabditis elegans COG-1A protein.
Length = 256
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 478 ENS*HSAIFSYNSLTLEKPEMRPNG 404
EN HS+ +S ++L LEK E P+G
Sbjct: 20 ENRKHSSTYSISNLLLEKKESSPSG 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,948
Number of Sequences: 27780
Number of extensions: 354094
Number of successful extensions: 782
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -