Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0467
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    27   3.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   4.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.2  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 209 WLWRRTEQLSQRNLVHGYANCVRRNFVQFIA 301
           +L  R   +S  +  HG  N + RNF++F++
Sbjct: 186 FLRNRASSISMSSNAHGNPNFLNRNFIEFLS 216


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 291 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLK 470
           NLS     T S+ K  I    D L   L+T E        P ++ ++    + C+FTN+K
Sbjct: 552 NLSFVNETTVSVDKVVICIPMDKLNTHLITFE--------PPLEEKKLKAIDRCHFTNVK 603

Query: 471 DVKSVYK 491
            V  ++K
Sbjct: 604 KVILIFK 610


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 396 RPEILPEIKGEQCSITELCNFTNLKDVKS 482
           RPEI PE +G  CSI ++ +   L D KS
Sbjct: 630 RPEISPEPRGINCSIDKI-HSLYLNDKKS 657


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 285  LYNLSLTKNITQSLSKF-GIEKSHDLLVCFLVTNEIDCRPEI 407
            L++   T+    S+  F  +E +H LL+C       +CRP +
Sbjct: 1076 LHSRQYTRESPFSIKDFMSLEHTHTLLICLYWAAPENCRPSL 1117


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 569 NKKQNFLLSFCLQLYLIILRPFEVI*FVDRFYIFQICKIA*--FCNRTLFTFYFGKYFRS 396
           +KK     SF L +Y+I+   F +     +F+ F +  +    F    L  F+    F  
Sbjct: 559 SKKSEINSSFSLAVYVIV-DFFSLWTTRHKFFRFLLLTVQSLVFAIEKLVNFFSMANFFL 617

Query: 395 AIYFICN*EAY 363
           A YF+CN  +Y
Sbjct: 618 AFYFVCNATSY 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,937
Number of Sequences: 5004
Number of extensions: 60815
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)