BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0467 (779 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 27 3.0 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 4.0 SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.0 SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.2 SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 9.2 >SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 656 Score = 27.1 bits (57), Expect = 3.0 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +2 Query: 209 WLWRRTEQLSQRNLVHGYANCVRRNFVQFIA 301 +L R +S + HG N + RNF++F++ Sbjct: 186 FLRNRASSISMSSNAHGNPNFLNRNFIEFLS 216 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 26.6 bits (56), Expect = 4.0 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +3 Query: 291 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLK 470 NLS T S+ K I D L L+T E P ++ ++ + C+FTN+K Sbjct: 552 NLSFVNETTVSVDKVVICIPMDKLNTHLITFE--------PPLEEKKLKAIDRCHFTNVK 603 Query: 471 DVKSVYK 491 V ++K Sbjct: 604 KVILIFK 610 >SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 2685 Score = 25.8 bits (54), Expect = 7.0 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +3 Query: 396 RPEILPEIKGEQCSITELCNFTNLKDVKS 482 RPEI PE +G CSI ++ + L D KS Sbjct: 630 RPEISPEPRGINCSIDKI-HSLYLNDKKS 657 >SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces pombe|chr 1|||Manual Length = 1888 Score = 25.4 bits (53), Expect = 9.2 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +3 Query: 285 LYNLSLTKNITQSLSKF-GIEKSHDLLVCFLVTNEIDCRPEI 407 L++ T+ S+ F +E +H LL+C +CRP + Sbjct: 1076 LHSRQYTRESPFSIKDFMSLEHTHTLLICLYWAAPENCRPSL 1117 >SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 926 Score = 25.4 bits (53), Expect = 9.2 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = -1 Query: 569 NKKQNFLLSFCLQLYLIILRPFEVI*FVDRFYIFQICKIA*--FCNRTLFTFYFGKYFRS 396 +KK SF L +Y+I+ F + +F+ F + + F L F+ F Sbjct: 559 SKKSEINSSFSLAVYVIV-DFFSLWTTRHKFFRFLLLTVQSLVFAIEKLVNFFSMANFFL 617 Query: 395 AIYFICN*EAY 363 A YF+CN +Y Sbjct: 618 AFYFVCNATSY 628 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,038,937 Number of Sequences: 5004 Number of extensions: 60815 Number of successful extensions: 169 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 169 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 377352472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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