Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0467
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0276 + 2270244-2270314,2270437-2270503,2270613-2270735,227...    36   0.048
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323...    29   3.1  
09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429     28   9.6  

>01_01_0276 +
           2270244-2270314,2270437-2270503,2270613-2270735,
           2270844-2270927,2271733-2271819,2272238-2272369,
           2272403-2272498,2272906-2272929
          Length = 227

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = +3

Query: 255 MVTRTVFGEILYNLSLTKNITQSLSKFGI--EKSHDLLVCFLVTNE 386
           + TRT+  E++YN S +K+IT+SL + GI  + S+ L   F  +NE
Sbjct: 69  LTTRTLHSELVYNYSGSKHITESLKRCGISDDTSYILAARFDASNE 114


>08_02_0182 -
           13930436-13931245,13931348-13931627,13931788-13932324,
           13932482-13932579,13932678-13933118
          Length = 721

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 552 KILFLIKIKSCSF-YYLHPNFLFP 620
           ++ F I + +CSF YY+ P++LFP
Sbjct: 195 RLQFFIMVMTCSFAYYIVPSYLFP 218


>09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429
          Length = 541

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -3

Query: 537 LTIISNNPSSF*GYLVCRQILHLSDL*NCIVL**NTVHLLFREVFQVCNLFHL 379
           L+I S++  S    L   Q+L + DL NC +      HL  R V   CNLFHL
Sbjct: 468 LSIFSSSGVSLLPSLSSFQVLRVLDLENCYLT--EGCHLDLRHV---CNLFHL 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,694
Number of Sequences: 37544
Number of extensions: 334522
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)