BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0467 (779 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0276 + 2270244-2270314,2270437-2270503,2270613-2270735,227... 36 0.048 08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323... 29 3.1 09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429 28 9.6 >01_01_0276 + 2270244-2270314,2270437-2270503,2270613-2270735, 2270844-2270927,2271733-2271819,2272238-2272369, 2272403-2272498,2272906-2272929 Length = 227 Score = 35.5 bits (78), Expect = 0.048 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%) Frame = +3 Query: 255 MVTRTVFGEILYNLSLTKNITQSLSKFGI--EKSHDLLVCFLVTNE 386 + TRT+ E++YN S +K+IT+SL + GI + S+ L F +NE Sbjct: 69 LTTRTLHSELVYNYSGSKHITESLKRCGISDDTSYILAARFDASNE 114 >08_02_0182 - 13930436-13931245,13931348-13931627,13931788-13932324, 13932482-13932579,13932678-13933118 Length = 721 Score = 29.5 bits (63), Expect = 3.1 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = +3 Query: 552 KILFLIKIKSCSF-YYLHPNFLFP 620 ++ F I + +CSF YY+ P++LFP Sbjct: 195 RLQFFIMVMTCSFAYYIVPSYLFP 218 >09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429 Length = 541 Score = 27.9 bits (59), Expect = 9.6 Identities = 21/53 (39%), Positives = 27/53 (50%) Frame = -3 Query: 537 LTIISNNPSSF*GYLVCRQILHLSDL*NCIVL**NTVHLLFREVFQVCNLFHL 379 L+I S++ S L Q+L + DL NC + HL R V CNLFHL Sbjct: 468 LSIFSSSGVSLLPSLSSFQVLRVLDLENCYLT--EGCHLDLRHV---CNLFHL 515 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,108,694 Number of Sequences: 37544 Number of extensions: 334522 Number of successful extensions: 757 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 757 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2091906552 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -