Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0467
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)                   29   4.2  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)
          Length = 478

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 243 RCDNCSVRR--HSHLKWI*DQARLNNCTVPLAVCNVIPNFLDVLHIFVK 103
           RCDN       HS +K+I    R++    PL  C ++P F+  L  F+K
Sbjct: 23  RCDNLRYDHVNHSRIKYI-TFTRISTLK-PLTPCRLVPQFVKYLWCFIK 69


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -3

Query: 180  LNNCTVPLAVCNVIPNFLDVLHIFVKVY 97
            L++CTVPL+ C V+  +L+   IFV +Y
Sbjct: 1644 LSDCTVPLSACTVLLLYLN--RIFVGLY 1669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,802,546
Number of Sequences: 59808
Number of extensions: 427526
Number of successful extensions: 917
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)