BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0467 (779 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical ... 44 2e-04 AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 30 2.1 AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 30 2.1 AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical ... 29 4.9 Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical p... 28 6.5 AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical ... 28 6.5 Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical pr... 28 8.6 Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 28 8.6 AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical ... 28 8.6 AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 28 8.6 >AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical protein W03F8.4 protein. Length = 183 Score = 43.6 bits (98), Expect = 2e-04 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Frame = +3 Query: 255 MVTRTVFGEILYNLSLTKNITQSLSKFGI-EKSHDLLVCFLVTNEIDCRPEILPEIKGEQ 431 M R++ E++Y+LS ++NIT SL FGI E S ++ + ++ IKG Sbjct: 77 MSCRSLAAELVYSLSPSRNITDSLVTFGIAEHSTAIIAAIFDDDSGKAMKKLAKAIKGTP 136 Query: 432 CSITE-LCNFTNLKDVKSVYKLNN 500 + E L F N+ +K VY++ N Sbjct: 137 VPLMEGLPKFANVNMIKKVYQVGN 160 Score = 35.9 bits (79), Expect = 0.032 Identities = 13/41 (31%), Positives = 27/41 (65%) Frame = +1 Query: 82 KTTLKIYLYKNVQNIEEIRNHITNGEWNCAIIKPSLILDPF 204 + T ++ L+K+V+N E+ + G+ + A+I+ L+L+PF Sbjct: 19 RKTCRVCLFKDVKNAAELSQQLKEGKIDAALIRAELVLEPF 59 Score = 28.7 bits (61), Expect = 4.9 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = +2 Query: 509 DEGLLDIIVSRMTTKNFVS 565 +EGL D IVSRM +K+FVS Sbjct: 165 EEGLSDHIVSRMVSKDFVS 183 >AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical protein Y113G7B.7 protein. Length = 314 Score = 29.9 bits (64), Expect = 2.1 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +3 Query: 396 RPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKRTK 515 +P +L EI G +C L NFTN+ +V ++++L K+ K Sbjct: 178 KPRVLEEI-GIRC----LANFTNISEVSNLFELEQWKKAK 212 >AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical protein W08E12.7 protein. Length = 391 Score = 29.9 bits (64), Expect = 2.1 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +3 Query: 291 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEIL 410 N ++TKNI ++ ++FG+ ++L L NEID +I+ Sbjct: 174 NTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKII 213 >AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical protein Y37E11AL.5 protein. Length = 490 Score = 28.7 bits (61), Expect = 4.9 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -1 Query: 446 FCNRTLFTFYFGKYFRSAIYFICN*EAYE*IMAFFYS 336 FC+ L F+F ++ AI+F C + + ++AFF++ Sbjct: 351 FCS-ALLLFFFREHSPMAIFFFCLFQFFHVVIAFFFA 386 >Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical protein Y43F4B.3 protein. Length = 714 Score = 28.3 bits (60), Expect = 6.5 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = +3 Query: 696 RRVANTDPSKSSASLNLPPDRKP 764 RR++ TD ++SS ++N+ DRKP Sbjct: 83 RRISATDATQSSRTMNVIEDRKP 105 >AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical protein Y43F4B.3 protein. Length = 714 Score = 28.3 bits (60), Expect = 6.5 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = +3 Query: 696 RRVANTDPSKSSASLNLPPDRKP 764 RR++ TD ++SS ++N+ DRKP Sbjct: 83 RRISATDATQSSRTMNVIEDRKP 105 >Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical protein Y52D3.1a protein. Length = 388 Score = 27.9 bits (59), Expect = 8.6 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 370 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 275 K +S L PN+++LC F+ +Y+I+P Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128 >Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein K04B12.1 protein. Length = 1764 Score = 27.9 bits (59), Expect = 8.6 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 615 KGNWGVGSKNCMT*F**ETKFFVVILLTIISNNPSS 508 K NW +C + F ++LLT ISNNP S Sbjct: 532 KANWTTTGVSCPSEIFTSPNTFEILLLTSISNNPIS 567 >AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical protein Y52D3.1a protein. Length = 388 Score = 27.9 bits (59), Expect = 8.6 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 370 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 275 K +S L PN+++LC F+ +Y+I+P Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128 >AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. Length = 1766 Score = 27.9 bits (59), Expect = 8.6 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 615 KGNWGVGSKNCMT*F**ETKFFVVILLTIISNNPSS 508 K NW +C + F ++LLT ISNNP S Sbjct: 534 KANWTTTGVSCPSEIFTSPNTFEILLLTSISNNPIS 569 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,807,616 Number of Sequences: 27780 Number of extensions: 343933 Number of successful extensions: 945 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 918 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 945 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1882685842 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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