Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0467
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical ... 44 2e-04
AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 30 2.1
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 30 2.1
AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical ... 29 4.9
Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical p... 28 6.5
AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical ... 28 6.5
Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical ... 28 8.6
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 28 8.6
>AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical
protein W03F8.4 protein.
Length = 183
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 255 MVTRTVFGEILYNLSLTKNITQSLSKFGI-EKSHDLLVCFLVTNEIDCRPEILPEIKGEQ 431
M R++ E++Y+LS ++NIT SL FGI E S ++ + ++ IKG
Sbjct: 77 MSCRSLAAELVYSLSPSRNITDSLVTFGIAEHSTAIIAAIFDDDSGKAMKKLAKAIKGTP 136
Query: 432 CSITE-LCNFTNLKDVKSVYKLNN 500
+ E L F N+ +K VY++ N
Sbjct: 137 VPLMEGLPKFANVNMIKKVYQVGN 160
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 82 KTTLKIYLYKNVQNIEEIRNHITNGEWNCAIIKPSLILDPF 204
+ T ++ L+K+V+N E+ + G+ + A+I+ L+L+PF
Sbjct: 19 RKTCRVCLFKDVKNAAELSQQLKEGKIDAALIRAELVLEPF 59
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 509 DEGLLDIIVSRMTTKNFVS 565
+EGL D IVSRM +K+FVS
Sbjct: 165 EEGLSDHIVSRMVSKDFVS 183
>AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.7 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 396 RPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKRTK 515
+P +L EI G +C L NFTN+ +V ++++L K+ K
Sbjct: 178 KPRVLEEI-GIRC----LANFTNISEVSNLFELEQWKKAK 212
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 291 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEIL 410
N ++TKNI ++ ++FG+ ++L L NEID +I+
Sbjct: 174 NTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKII 213
>AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical
protein Y37E11AL.5 protein.
Length = 490
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 446 FCNRTLFTFYFGKYFRSAIYFICN*EAYE*IMAFFYS 336
FC+ L F+F ++ AI+F C + + ++AFF++
Sbjct: 351 FCS-ALLLFFFREHSPMAIFFFCLFQFFHVVIAFFFA 386
>Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 696 RRVANTDPSKSSASLNLPPDRKP 764
RR++ TD ++SS ++N+ DRKP
Sbjct: 83 RRISATDATQSSRTMNVIEDRKP 105
>AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 696 RRVANTDPSKSSASLNLPPDRKP 764
RR++ TD ++SS ++N+ DRKP
Sbjct: 83 RRISATDATQSSRTMNVIEDRKP 105
>Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 370 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 275
K +S L PN+++LC F+ +Y+I+P
Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 615 KGNWGVGSKNCMT*F**ETKFFVVILLTIISNNPSS 508
K NW +C + F ++LLT ISNNP S
Sbjct: 532 KANWTTTGVSCPSEIFTSPNTFEILLLTSISNNPIS 567
>AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 370 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 275
K +S L PN+++LC F+ +Y+I+P
Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 615 KGNWGVGSKNCMT*F**ETKFFVVILLTIISNNPSS 508
K NW +C + F ++LLT ISNNP S
Sbjct: 534 KANWTTTGVSCPSEIFTSPNTFEILLLTSISNNPIS 569
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,616
Number of Sequences: 27780
Number of extensions: 343933
Number of successful extensions: 945
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -