Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0467
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34412.1 68417.m04888 expressed protein                             33   0.16 
At1g11170.2 68414.m01279 expressed protein contains Pfam profile...    28   8.0  

>At4g34412.1 68417.m04888 expressed protein
          Length = 143

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = +3

Query: 261 TRTVFGEILYNLSLTKNITQSLSKFGIEKS 350
           TRT+  E++YN S +K+IT+SL + GI ++
Sbjct: 71  TRTLHSELVYNYSGSKHITESLKRCGISEN 100


>At1g11170.2 68414.m01279 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 335

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 206 KWLWRRTEQLSQRNLVHGYANCVRRNFVQFIAYQKYNTKFKQVWNRKK 349
           K  W  T  L Q +LVHG+   ++  +   + +  YN++F    N K+
Sbjct: 284 KAAWLCTWNLIQNDLVHGWGMDMKLGYCAQVTFFLYNSRFCGRPNEKR 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,401,767
Number of Sequences: 28952
Number of extensions: 297780
Number of successful extensions: 729
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)