Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0465
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    29   0.89 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   2.7  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   3.6  
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    26   6.3  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 271 FFFAEVLYLSMRSHKTP*VITQIIIMRDMI-FITRCYSFTVEVNREHLLSAYYVRMVFFY 447
           F   + L L +R       +T  +  ++M+  + RC S  + +N  H    ++    F++
Sbjct: 562 FLQIDALELLLRKTALKLKLTDAVYQQEMLNVVQRCVSHFLAINESHFTDFFWPYSQFYF 621

Query: 448 CL 453
           C+
Sbjct: 622 CI 623


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 359 FLLHDVILSPWKSIVNIC*VLITLEWFFF 445
           F+LHD  LS W+S+V I   L+ + + FF
Sbjct: 230 FVLHDGSLSIWQSLVMILYYLLYVLFVFF 258


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 450 TIKKNHSNVIST*QMFTIDFHGERITSCN 364
           TI+ NH ++++     T DF+G R+ SC+
Sbjct: 8   TIQTNHQDLVND---VTYDFYGRRMVSCS 33


>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 289 KLLQKKTYIWYSMSRPQCKYTREVDKNCITE 197
           K  +  T +W S     C+Y  EV ++CI E
Sbjct: 41  KARKYNTIVWQSRHPILCEYIEEVVQSCIEE 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,022
Number of Sequences: 5004
Number of extensions: 59914
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)