Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0464
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    32   0.059
SPAC167.04 |pam17||presequence translocase-associated motor subu...    26   5.1  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    25   8.9  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 382 EFEFRIVHENKISIHLEFYSFLNME*TLKEDRVAVIALHRCG 257
           +F+FR+ HEN +SIH+     +N E   K  + A+  L   G
Sbjct: 165 QFQFRVGHENFVSIHVSLVPVINGEQKTKPTQQAIRDLRSLG 206


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 441 KYCHTVKTFLLECWPQKSLLNSNFELFMKIK 349
           K C+ VKT+  E   QK   + N+  F+K++
Sbjct: 25  KTCYNVKTYSTESIKQKKPQDLNWPTFLKLR 55


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 69  FGISLNSRLHSFYHCWSPNRPRATTS*PVIYTRVF 173
           F IS N R+    H W+ NR         +YT ++
Sbjct: 71  FNISSNPRVSLLVHDWTTNRQETDPDASSLYTLLY 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,783
Number of Sequences: 5004
Number of extensions: 43132
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)