Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0464
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   29   4.1  
SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)            27   9.4  
SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 48  GQQFLLTFGI-SLNSRLHSFYHC 113
           GQ   LTFG  SLN R++S +HC
Sbjct: 138 GQNHCLTFGYHSLNQRINSTWHC 160


>SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)
          Length = 393

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 5   LTPFSPWFCLTPSEG 49
           +TPFS WFC+  S G
Sbjct: 106 ITPFSRWFCMVSSPG 120


>SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 94  RREFKEIPNVSRNCWPFRW 38
           RRE    P  SR+CWP  W
Sbjct: 52  RREGTSTPLTSRDCWPKAW 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,117,288
Number of Sequences: 59808
Number of extensions: 279388
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)