Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0464
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 75  ISLNSRLHSFYHCWSPNRPRAT 140
           I+ +++L  FY  WSP+RPR+T
Sbjct: 171 ITTHAKLGDFYLVWSPSRPRST 192


>Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical protein
            ZK930.1 protein.
          Length = 1354

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +3

Query: 132  RATTS*PVIYTRVFIVSFDGTINESFGYIQICQYVKNLNWR*PQRCNAITATRSSLS 302
            R  T+ P  Y+ V   +FD  +NE   ++    +++N+N R P+R  A +A+   LS
Sbjct: 886  RTVTNTPAPYSPVKNTTFDNQVNEMLAHLNEL-HMRNVNCR-PKRPLAASASHPVLS 940


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,811
Number of Sequences: 27780
Number of extensions: 233695
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)