Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0463
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7LBR1 Cluster: Charged multivesicular body protein 1b;...    65   1e-09
UniRef50_Q7ZVB1 Cluster: Charged multivesicular body protein 1b;...    62   1e-08
UniRef50_Q15EU1 Cluster: Vacuolar assembly/sorting protein D1D2-...    61   2e-08
UniRef50_Q9TXI3 Cluster: Putative uncharacterized protein F23C8....    54   5e-06
UniRef50_Q9FZ60 Cluster: F11A6.7 protein; n=11; Viridiplantae|Re...    44   0.003
UniRef50_O60074 Cluster: Vacuolar sorting protein Did2; n=1; Sch...    42   0.015
UniRef50_P69771 Cluster: Vacuolar protein-sorting-associated pro...    37   0.42 
UniRef50_A2Q7C4 Cluster: Remark: RAD52 Inhibitor; n=9; Eurotiomy...    35   2.3  

>UniRef50_Q7LBR1 Cluster: Charged multivesicular body protein 1b;
           n=55; Fungi/Metazoa group|Rep: Charged multivesicular
           body protein 1b - Homo sapiens (Human)
          Length = 199

 Score = 65.3 bits (152), Expect = 1e-09
 Identities = 35/50 (70%), Positives = 42/50 (84%)
 Frame = +3

Query: 6   VDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLR 155
           VD LLQ++ADEAGL+LNMELP G  + S+GT +V S EQDEL+QRLARLR
Sbjct: 149 VDMLLQEMADEAGLDLNMELPQG-QTGSVGT-SVASAEQDELSQRLARLR 196


>UniRef50_Q7ZVB1 Cluster: Charged multivesicular body protein 1b;
           n=13; Coelomata|Rep: Charged multivesicular body protein
           1b - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 199

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 32/50 (64%), Positives = 41/50 (82%)
 Frame = +3

Query: 6   VDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLR 155
           VD L+ ++ADEAGL+LNMELP G  + S+GT +V S EQDEL+QRLA+LR
Sbjct: 149 VDTLMMEMADEAGLDLNMELPQG-QTGSVGT-SVASAEQDELSQRLAKLR 196


>UniRef50_Q15EU1 Cluster: Vacuolar assembly/sorting protein
           D1D2-like protein; n=4; Schistosoma|Rep: Vacuolar
           assembly/sorting protein D1D2-like protein - Schistosoma
           mansoni (Blood fluke)
          Length = 196

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 30/53 (56%), Positives = 39/53 (73%)
 Frame = +3

Query: 3   DVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLRQA 161
           +V  L+ QVADE G+ELN ELP G   TS+  A + ++E+D LTQRLARLRQ+
Sbjct: 145 EVQGLINQVADETGIELNYELP-GSTHTSVSVAPISAEEEDGLTQRLARLRQS 196


>UniRef50_Q9TXI3 Cluster: Putative uncharacterized protein F23C8.6;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein F23C8.6 - Caenorhabditis elegans
          Length = 205

 Score = 53.6 bits (123), Expect = 5e-06
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 6   VDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLR 155
           VD L+ + AD+AG+ELN ELPS VP T++ T T    E  +LT+RLA LR
Sbjct: 155 VDALIAEAADKAGIELNQELPSNVP-TALPTGTQAVSEDKDLTERLAALR 203


>UniRef50_Q9FZ60 Cluster: F11A6.7 protein; n=11; Viridiplantae|Rep:
           F11A6.7 protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 222

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 23/51 (45%), Positives = 36/51 (70%)
 Frame = +3

Query: 3   DVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLR 155
           +V++L+QQVAD+ GLE+++ LP      +I T T    E+D+LT+RLA L+
Sbjct: 151 EVNSLMQQVADDYGLEVSVGLPQPA-GHAIPTKTEEKVEEDDLTRRLAELK 200


>UniRef50_O60074 Cluster: Vacuolar sorting protein Did2; n=1;
           Schizosaccharomyces pombe|Rep: Vacuolar sorting protein
           Did2 - Schizosaccharomyces pombe (Fission yeast)
          Length = 178

 Score = 41.9 bits (94), Expect = 0.015
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 3   DVDNLLQQVADEAGLELNMELPS--GVPSTSIGTATVVSQEQDELTQRLARLR 155
           DVD L+Q VADEAGLE N  + +   VP+ S+ T      E D L +RL  LR
Sbjct: 126 DVDLLMQTVADEAGLEFNQNMNNNLSVPAASVPT-PAAPVEDDNLQERLRALR 177


>UniRef50_P69771 Cluster: Vacuolar protein-sorting-associated
           protein 46; n=14; Eukaryota|Rep: Vacuolar
           protein-sorting-associated protein 46 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 204

 Score = 37.1 bits (82), Expect = 0.42
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 6   VDNLLQQVADEAGLELNMELP-SGVPSTSIGTATVVSQEQDELTQRLARLR 155
           VD L+ +VADE G+EL        VP        V  +++D+L QRL  LR
Sbjct: 153 VDELMSKVADENGMELKQSAKLDNVPEIKAKEVNVDDEKEDKLAQRLRALR 203


>UniRef50_A2Q7C4 Cluster: Remark: RAD52 Inhibitor; n=9;
           Eurotiomycetidae|Rep: Remark: RAD52 Inhibitor -
           Aspergillus niger
          Length = 211

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 3   DVDNLLQQVADEAGLELNMEL---PSGVPSTSIGTATVVSQE-QDELTQRLARLR 155
           DVD L++Q+AD+AG++L M L    +  P   +     V  E +D L  RL  LR
Sbjct: 154 DVDRLMEQLADDAGVDLRMALEQDAAAAPKEEVKAPKQVDTELEDGLDARLRALR 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,822,643
Number of Sequences: 1657284
Number of extensions: 11809048
Number of successful extensions: 26129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26115
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)