Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0463
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...    42   9e-05
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   4.6  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   8.0  

>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 3   DVDNLLQQVADEAGLELNMELPS--GVPSTSIGTATVVSQEQDELTQRLARLR 155
           DVD L+Q VADEAGLE N  + +   VP+ S+ T      E D L +RL  LR
Sbjct: 126 DVDLLMQTVADEAGLEFNQNMNNNLSVPAASVPT-PAAPVEDDNLQERLRALR 177


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 566 FFLIYTN**AWN-KFQYSLCYR-TKYSFIELVYKI 468
           +   Y +   WN  F Y + YR +KYS I+L YK+
Sbjct: 36  YMAFYVSLLVWNFYFGYRVFYRISKYSLIDLTYKL 70


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 241 QQPYL*GLNIYMYYNSSDPIKLIHIYS 161
           Q P L G +++ YY S D I   H+++
Sbjct: 804 QIPCLMGYSLFQYYRSGDSISFKHLFT 830


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 208 MYYNSSDPIKLIHIYSACLNLASLCVSSSCSWETTVAVPIDVLGTPD 68
           +Y  S D ++   I  AC  L    V S C W+ +  + + +   PD
Sbjct: 279 LYRFSDDTVRFEMIQDACRILIDNQVGSFCKWQFSQFMELPISLNPD 325


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 167 LFCLSQPGKSLCEFVL 120
           +FC S P KS+ EFVL
Sbjct: 355 VFCASSPDKSVVEFVL 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,689
Number of Sequences: 5004
Number of extensions: 55656
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)