Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0463
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0904 + 25832026-25832643                                         36   0.024
07_03_1627 + 28229292-28229615,28229735-28229812,28231105-282311...    29   4.8  

>06_03_0904 + 25832026-25832643
          Length = 205

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 3   DVDNLLQQVADEAGLELNMELP-SGVPSTSIGTATVVSQEQDELTQRLARLR 155
           +V++L+QQVAD+ GLE+++ LP +   +         + ++D+L++RLA L+
Sbjct: 151 EVNSLMQQVADDYGLEVSVGLPQAAAHAIPAAKEKEKAVDEDDLSRRLAELK 202


>07_03_1627 +
           28229292-28229615,28229735-28229812,28231105-28231164,
           28231750-28232040,28232149-28232277
          Length = 293

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 98  RNCCFPRTRRTHTETCQVETS 160
           RNCC PR + T T++C++ T+
Sbjct: 37  RNCCLPRLKTT-TQSCRITTA 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,630
Number of Sequences: 37544
Number of extensions: 281399
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)