Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0463
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)                     31   0.69 
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_41765| Best HMM Match : Transgly_assoc (HMM E-Value=0.49)           29   3.7  
SB_22038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_17194| Best HMM Match : Ectatomin (HMM E-Value=3.8)                 28   6.5  
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)
          Length = 386

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = +3

Query: 36  EAGLELNMELPSGVPSTSIGTAT--VVSQEQDELTQRLARLRQAE 164
           +AG ELN +LPS +   ++GT+   ++   ++E+ +R  +LRQ E
Sbjct: 49  DAGGELNEKLPSSI-KNNLGTSAEEIIHSNEEEVAKREEKLRQLE 92


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 36  EAGLELNMELPSGVPSTSIGTAT--VVSQEQDELTQRLARLRQAE 164
           +AG ELN +LPS +   S+G +   V    ++E+ +R  RLRQ E
Sbjct: 193 DAGGELNEKLPSSI-KKSLGPSAEEVFRSNEEEVARREERLRQLE 236


>SB_41765| Best HMM Match : Transgly_assoc (HMM E-Value=0.49)
          Length = 303

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 36  EAGLELNMELPSGVPSTSIGTA-TVVSQEQDELTQRLARLRQAE 164
           +AG ELN +LPS + +    +A  ++   ++E+ +R  +LRQ E
Sbjct: 113 DAGGELNEKLPSSIKNNLGPSAEEIIHSNEEEVAKREEKLRQLE 156


>SB_22038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 6   VDNLLQQVADEAGLELNMELPSGVPST-SIGTATVVSQEQDELTQ 137
           V+ L+ QVA+E GLE+  +L +  P T S+  +   ++++D+L++
Sbjct: 1   VEALINQVAEENGLEVIKQLDAVQPGTASLRDSERSTEKEDQLSR 45


>SB_17194| Best HMM Match : Ectatomin (HMM E-Value=3.8)
          Length = 132

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 6   VDNLLQQVADEAGLELNMELPSGVPST-SIGTATVVSQEQDELTQ 137
           V+ L+ QVA+E GLE+  +L +  P T S+  +   ++++D+L++
Sbjct: 39  VEALINQVAEENGLEVIKQLDAVQPGTASLRDSERSTEKEDQLSR 83


>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 36  EAGLELNMELPSGVPSTSIGTATVVSQ-EQDELTQRLARLRQAE 164
           +AG ELN +LPS + +    +A  +++  ++E+ +R  +LRQ E
Sbjct: 113 DAGGELNEKLPSSIKNNLGPSAEEITRSNEEEVAKREEKLRQLE 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,238,836
Number of Sequences: 59808
Number of extensions: 369623
Number of successful extensions: 702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)