Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0463
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical p...    27   9.9  
U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine rece...    27   9.9  

>AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical
           protein F23C8.6 protein.
          Length = 205

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 6   VDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLR 155
           VD L+ + AD+AG+ELN ELPS VP T++ T T    E  +LT+RLA LR
Sbjct: 155 VDALIAEAADKAGIELNQELPSNVP-TALPTGTQAVSEDKDLTERLAALR 203


>Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical
           protein T24B8.2 protein.
          Length = 411

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 3   DVDNLLQQVADEAGLELNMELPSGVPSTSIGTATV-VSQEQDELTQRLARLRQA 161
           D++  L+ +  +     ++ LP   P+   G     V+ E+D+L +RLARLRQA
Sbjct: 358 DLEQELEDLISDNKKNESVHLPEA-PTNRFGLFDKEVTPEEDQLEKRLARLRQA 410


>Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical
           protein C14A4.12b protein.
          Length = 697

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 154 LNLASLCVSSSCSWETTVAVPIDVLGTPD 68
           +N+ SLC+  SC++     + I V GTP+
Sbjct: 131 VNVLSLCICISCAFADIGNIGIKVFGTPN 159


>Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical
           protein C14A4.12a protein.
          Length = 717

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 154 LNLASLCVSSSCSWETTVAVPIDVLGTPD 68
           +N+ SLC+  SC++     + I V GTP+
Sbjct: 131 VNVLSLCICISCAFADIGNIGIKVFGTPN 159


>U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein34 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 270 YENICYNLITNNHTFKV*TFTCITIALIQLN*FTFIL 160
           ++   YN + N  T +V  F+ IT++L+ +N + FI+
Sbjct: 106 FKPFSYNTVFNPRTTRVIIFSVITLSLLIVNCWLFII 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,169
Number of Sequences: 27780
Number of extensions: 307593
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)