Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0462
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    44   1e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    31   0.18 
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    27   1.7  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   1.7  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    25   6.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   6.7  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = +3

Query: 3   SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 107
           +Y +FT  N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 469 AYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 9   AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 107
           AFF  +N   AK+L+ +LQEANQ     L +MA
Sbjct: 532 AFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 276 NANKNLIYSRQIVCNHCPPFGYSCQNCFRV*KSRHHLVHLRRICSCSTRRHHHR 115
           N N  ++  RQI+         S  N  R  K R+H    +R  S STR H  R
Sbjct: 231 NDNNEIVDQRQILTAGLNIRKSSANNSMRDDKKRNHKSSYKRSLSPSTRYHQDR 284


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 12  FFTPSNSRQAKDLVSVLQEANQII 83
           FFTP +   A +LV+VL++A Q I
Sbjct: 519 FFTPQDKSHAGELVNVLRQAKQDI 542


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 545 LNINKILHEFDDIILLGKFQSKNALFCKSW 456
           L+ N + HE  +   + K  +KN + CK W
Sbjct: 200 LDSNSLTHEKIEFATITKDTTKNKMVCKIW 229


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 211 VAKGGAVVTNDLTTINKIFVGISKRVNPRNIDKCYDL*ILF 333
           +A    VVT  +TTIN +   +     P N+   + L I+F
Sbjct: 559 MATSSDVVTQQVTTINNLRFRVLDTYPPNNVIYLFSLHIIF 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,585
Number of Sequences: 5004
Number of extensions: 42359
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)