Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0462
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 42 4e-04
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 40 0.001
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 40 0.002
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 36 0.020
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 35 0.060
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 30 1.3
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 30 1.7
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 27 9.1
08_01_0397 - 3509186-3510291,3510322-3512335 27 9.1
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/35 (45%), Positives = 29/35 (82%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 107
++ FFT SN++ +++LV +L+EA Q+++P L+SMA
Sbjct: 518 AFTFFTLSNAKFSRNLVKILREAGQVVNPALESMA 552
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
SY FF+ + + A DLV VL+ ANQ + P+LQ MA R
Sbjct: 948 SYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMAAR 984
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
+Y FF +S+ A DLV +L+ ANQ +S QL+ M R
Sbjct: 524 AYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSR 560
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQ 77
+Y FFT +N+R AKDL+++L+EA Q
Sbjct: 410 AYTFFTAANARFAKDLINILEEAGQ 434
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
+Y FF +S+ A DL+ +L+ ANQ + L MA R
Sbjct: 494 AYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASR 530
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 9 AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
AFF +NS A+ L ++QE+NQ + L A R
Sbjct: 518 AFFNENNSSMARSLAELMQESNQEVPAWLSRYAAR 552
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 9 AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
AFF SN+ A+ L ++QEANQ + L+ A R
Sbjct: 693 AFFNESNTPLARPLSELMQEANQEVPQWLERYAAR 727
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 211 VAKGGAVVTNDLTTINKIFVGISKRVNPRNIDKCYDL*ILFG 336
+ KGG++V ND+ + K + ISK PR +L +FG
Sbjct: 401 IGKGGSIV-NDMRSKTKAAIYISKGEKPRKASSSDELVEVFG 441
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 12 FFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
F + R A DLV L+ + Q + L+ +ADR
Sbjct: 764 FISEEEERYAPDLVKALELSEQAVPEDLKGLADR 797
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,390
Number of Sequences: 37544
Number of extensions: 248769
Number of successful extensions: 519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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