Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0462
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  48   5e-06
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 21/36 (58%), Positives = 30/36 (83%)
 Frame = +3

Query: 3   SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 110
           SY FFT +N++QAK+LVSVLQEA Q ++P+L ++ D
Sbjct: 386 SYTFFTVNNAKQAKELVSVLQEAKQHVNPKLLNLQD 421


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 237  CNHCPPFGYSCQNCFRV*KSRHH 169
            C  CP F Y C+NCFRV +S  H
Sbjct: 1199 CKTCPDFDY-CENCFRVRRSHRH 1220


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 9    AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 107
            +FF   N   AK+L+ +L+E+ Q I   L+SMA
Sbjct: 1202 SFFNHKNKNVAKELMDILEESKQEIPSWLESMA 1234


>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 303 YITRIHPLRNANKNLIYSRQIVCNHCPPFGYSCQNCFRV*KSRHHLVHLRRIC 145
           Y+  +HPL      L + RQ+ C+   PF   C       +  H L H R+IC
Sbjct: 31  YVILLHPLDMCYP-LAHFRQM-CHPLAPFRQMCHPLAPFRQMCHPLAHFRQIC 81



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 285 PLRNANKNLIYSRQIVCNHCPPFGYSCQNCFRV*KSRHHLVHLRRIC 145
           P R     L + RQI C+   PF   C       +  H L H RRIC
Sbjct: 66  PFRQMCHPLAHFRQI-CHPLAPFRQICHALTPFRQICHALAHFRRIC 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,645,403
Number of Sequences: 59808
Number of extensions: 300946
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)