Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0462
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 44 6e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 39 0.003
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 38 0.004
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 36 0.029
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 31 0.47
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 31 0.81
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 31 0.81
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 29 2.5
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 29 2.5
At4g02000.1 68417.m00269 expressed protein low similarity to zin... 28 4.3
At1g12020.1 68414.m01388 expressed protein 28 4.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 104
+Y FFT +N+R AK+L ++LQEA Q +SP+L SM
Sbjct: 444 AYTFFTVANARFAKELTNILQEAGQKVSPELASM 477
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
+Y FF +++ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 573 AYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 609
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 502 AFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 502 AFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 502 AFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 104
++ FFT N++ A++LV +LQEA Q++ P L ++
Sbjct: 510 AFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 3 SYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
++ FFT + + A DL+ VL+ ANQ + PQ++ +A R
Sbjct: 779 AFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMR 815
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 9 AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
AFF +N+ AK L ++QEANQ + L A R
Sbjct: 507 AFFNDNNTTMAKPLAELMQEANQEVPDWLTRYASR 541
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.7 bits (66), Expect = 0.81
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 9 AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
AFF +N++ A+ L ++QEANQ + L A R
Sbjct: 510 AFFNENNAQLARSLAELMQEANQEVPEWLTRYASR 544
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.7 bits (66), Expect = 0.81
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 9 AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
AFF +N++ A+ L ++QEANQ + L A R
Sbjct: 510 AFFNENNAQLARSLAELMQEANQEVPEWLTRYASR 544
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 9 AFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 113
AFF N+ A+ L ++QEANQ + L A R
Sbjct: 520 AFFNDGNTSLARPLAELMQEANQEVPEWLTRYASR 554
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
contains Pfam PF00569: Zinc finger, ZZ type domain;
identical to histone acetyltransferase HAC4 (GI:14794966)
{Arabidopsis thaliana}
Length = 1456
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 309 FIYITRIHPLRNANKNLIYSRQIVCNHCPPFGYSCQNCFRV*KSR 175
FI + H ++ ++ + VCNHC F C C+ V ++R
Sbjct: 1157 FIMVHLQHCCKHCTTLMVSGNRWVCNHCKNF-QICDKCYEVEQNR 1200
>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 314
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 159 LRRICSCSTRRHHHRNGRP 103
LRRICS R HHRN P
Sbjct: 121 LRRICSSCFRMTHHRNSCP 139
>At1g12020.1 68414.m01388 expressed protein
Length = 226
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 342 VISKQDLQIITFIYITRIH-----PLRNANKNLIYSRQIVCNHCPPFGYSCQNCF 193
V+S +D +++ ++ T + P NK + + + NH P F C +C+
Sbjct: 37 VLSPEDREVLAYLISTASYSGERNPTSRLNKTKAHKKALFDNHSPLFHCDCFSCY 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,695
Number of Sequences: 28952
Number of extensions: 209468
Number of successful extensions: 430
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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