Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0461
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    83   2e-16
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    77   1e-14
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    75   5e-14
03_05_0830 + 28034179-28035492                                         29   3.1  
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    27   9.6  

>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = +1

Query: 28  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 195
           MVAAKK KK+ ++IN++L LVMKSGKY LGYK  L+TLR  KAKLVII+ N PPLR
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 31/41 (75%), Positives = 37/41 (90%)
 Frame = +1

Query: 517 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 639
           RKSEIEYYA+LAK  VHH+ GNN++LGTACGKY+RVC L+I
Sbjct: 56  RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSI 96


>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 31/41 (75%), Positives = 36/41 (87%)
 Frame = +1

Query: 517 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 639
           RKSEIEYYA+L K  VHH+ GNN++LGTACGKYYRVC L+I
Sbjct: 97  RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSI 137



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 35/55 (63%), Positives = 42/55 (76%)
 Frame = +1

Query: 31  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 195
           V A  QKK+ ++IN++L LVMKSGKY LGYK  LKTLR  K KL+I+A N PPLR
Sbjct: 43  VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLR 97


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = +1

Query: 517 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 639
           RKSEIEYYA+L K  V+H++GNN++LGTACGKYYRVC L++
Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSV 214



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/49 (69%), Positives = 37/49 (75%)
 Frame = +1

Query: 49  KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 195
           KK  E IN++L LVMKSGKY LGYK  LKTLR  K KLVI+A N PPLR
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 97  SGKYCLGYKQTLKTLRQGKAKLVIIAKN 180
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +1

Query: 79  LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 192
           L LV ++ +  CL  G K+ +K++R+G+  L IIA N  P+
Sbjct: 33  LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,955
Number of Sequences: 37544
Number of extensions: 307728
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)