Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0461
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    84   7e-17
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    82   3e-16
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    79   2e-15
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    28   4.6  
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...    28   6.1  
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...    27   8.0  

>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 40/56 (71%), Positives = 45/56 (80%)
 Frame = +1

Query: 28  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 195
           MVAAKK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 30/41 (73%), Positives = 37/41 (90%)
 Frame = +1

Query: 517 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 639
           R+SEIEYYA+LAK GVHHY+ NN++LGTACGKY+RV  L+I
Sbjct: 56  RRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSI 96


>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/56 (69%), Positives = 44/56 (78%)
 Frame = +1

Query: 28  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 195
           MVA KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 30/41 (73%), Positives = 37/41 (90%)
 Frame = +1

Query: 517 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 639
           R+SEIEYYA+LAK GVH Y+GNN++LGTACGKY+RV  L+I
Sbjct: 56  RRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSI 96


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 38/56 (67%), Positives = 43/56 (76%)
 Frame = +1

Query: 28  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 195
           MV  KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 31/41 (75%), Positives = 38/41 (92%)
 Frame = +1

Query: 517 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 639
           R+SEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I
Sbjct: 56  RRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 58  IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 189
           I  +   +++  KS  Y  GY Q+ +T R  + KL+ I K  PP
Sbjct: 7   IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 97  SGKYCLGYKQTLKTLRQGKAKLVIIAKN 180
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 97  SGKYCLGYKQTLKTLRQGKAKLVIIAKN 180
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,785
Number of Sequences: 28952
Number of extensions: 264602
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)