Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0460
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   0.97 
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    27   1.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   2.2  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   3.0  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   3.0  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   3.9  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   3.9  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.0  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   9.0  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = +1

Query: 79  SESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRATN 258
           S S  S+   SSS +   +    ++ST TVT     S+ SS VP S T++ +L   +A+N
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP-SSTAALALNASKASN 284

Query: 259 ADS 267
             S
Sbjct: 285 HTS 287


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 165 SYNADADIGMLVTGTFVGYLIIFAGAAAGY 254
           SYN + ++ +     F+G+L++  G   GY
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGY 46


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 511 MLHTNTMLSY*DYYGPPNNLNSTAITVTS 597
           ++HTNT +S       P N N+T +++T+
Sbjct: 95  LIHTNTSISKPSQTATPQNTNTTQVSLTN 123


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 199 SPVPLSGTSS--YSLVRPRATNADSFTQTDR 285
           SP+P SG SS  Y+  R RAT+     Q DR
Sbjct: 100 SPIPGSGRSSPLYTQPRSRATSPSRVRQADR 130


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 106 LSSSFWSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSS--YSLVRPRATNADSF 270
           L SS  S +   R  +S++++T         SPV  S TSS  Y      AT   SF
Sbjct: 215 LKSSILSLYASPRPQVSSSSITTNATYQNLPSPVSTSTTSSQPYGAFHQPATTGSSF 271


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 150 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGY*CRLLHTNGSTSS 293
           A  Y S+   A I ML+  +F GY I+  F GA  G+      T G+ S+
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFLFASDTYGTPST 165


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 204 GTFVGYLIIFAGAAAGY*CRLLHTNGSTSSIRWSVLP 314
           G      ++F+G +AGY C +     S   I W++ P
Sbjct: 371 GRLFAVALLFSGMSAGYVCTIAGQIVSEGYINWNLRP 407


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
 Frame = +2

Query: 149 GSPLPQLQCRCGY----RHARHRYLC--RVPHHIRWCGRGLLMQTPSHKRIDIFYSLVGV 310
           G+P     C+C       H+R    C  +  H+  + G+ +           +FY     
Sbjct: 110 GAPRMCGTCKCWLPDRSHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQFLFYGFSAA 169

Query: 311 ALFVASGAIIIDRFQHY 361
            + + S AI+I R  HY
Sbjct: 170 CMVLISTAIMISRTYHY 186


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 257  MQTPSHKRIDIFYSLVGVALFVASGAII 340
            M TP  K  ++F+S V +   +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 127 WHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRATNADSFTQTDRHLL 294
           WHL  +  L +  +T +   S   SP+    T S S+++   + +DS   T   LL
Sbjct: 563 WHLSAQTQLVSNPLTFRGIFSLVFSPILEISTGSISIIK-SISLSDSVVDTIGELL 617


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 317 FVASGAIIIDRFQHYGKSEIKDKNLAKASLAIINGAI 427
           FV +G  IID  +  G  +IKD      S A+I   +
Sbjct: 10  FVTTGMFIIDEIEFDGGKKIKDIIGGAGSFALIGARL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,254
Number of Sequences: 5004
Number of extensions: 48394
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)