Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0460
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0314 - 14238620-14240128                                         28   5.3  
03_06_0653 - 35305279-35306163                                         28   7.0  

>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +2

Query: 191 HARHRYLCRVPHHIRWCGRGLLMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS 370
           H R R L  VP  +R+     L Q P+   +    S + VAL  A+ A+  D     G S
Sbjct: 119 HRRRRPL--VPFVLRYPALFRLFQAPTSHPLSPNLSTLAVALTPAAEALAADLAALRGSS 176

Query: 371 EIKDKNLAKAS--LAIINGAILLVDAV 445
           E+  +  AK    L +  G  LLV  +
Sbjct: 177 ELAPRLAAKMHRLLLLAPGRSLLVSKI 203


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 251 ARGRTSEYDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKL 114
           A   +SE +   D   GDE A  R C      E+  R  +CQ +K+
Sbjct: 175 AASSSSEEEAACDDDDGDECAARRWCCAREYFEAKERWEECQFKKM 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,001
Number of Sequences: 37544
Number of extensions: 342068
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)