Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0460
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               30   1.3  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               30   1.3  
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)                      29   2.4  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   29   3.1  
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)           29   4.1  
SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09)           28   5.4  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         28   5.4  
SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)          28   7.2  
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  28   7.2  
SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 27   9.5  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +3

Query: 288  SSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAK 467
            S +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ +
Sbjct: 972  SPLRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQER 1031

Query: 468  LRTQNRAAQSE 500
            +    R  Q +
Sbjct: 1032 IYRHARVCQGD 1042


>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 230 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 57
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 49  YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 106


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 230 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 57
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 609 YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 666


>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
          Length = 496

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 31  DTSTRLAIIIIKFKFRSESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISA 192
           D ST  A+++I     S S  +   LS S W W +    WLS   +  ++ I A
Sbjct: 123 DNST--AVVVINHMGTSHS-TALNALSKSIWLWAIERNLWLSAAHLAGKLNIEA 173


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = +2

Query: 245 RGLLMQTPSHKRIDIFYSLVGV-ALFVASGA--IIIDRFQHYGKSEIKDKNLAKASLAII 415
           R LL++   + RI I  +L G+ AL +  G   +I ++ + +G S +    L  ASL ++
Sbjct: 751 RALLLKDLYYPRITIEGTLSGLTALDIGKGTELVITEKGRSHGYSNM---TLHMASLTVM 807

Query: 416 NGAILLVDAVLT 451
           NGAIL    +++
Sbjct: 808 NGAILRASGLVS 819


>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
          Length = 317

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +2

Query: 224 HHIRWCGRG-LLMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EIKDKNL 391
           H +   G G L  +TP  +   IFY+LVG+ L + +   + + + HY K     I+ + L
Sbjct: 113 HLLTTIGYGNLTPKTPGGQLFTIFYALVGIPLTLLTLKSMGNHYNHYIKKLIILIETRCL 172

Query: 392 AKASLAIINGAILLVD 439
            +  +  + G + L D
Sbjct: 173 KRTEVKGLEGKVCLGD 188


>SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 520 YAAFKSFSDCAALFCVRSLASSLRED 443
           YA  K  + C+ +FC   +A  +RED
Sbjct: 443 YATLKPVTSCSNMFCSSGMACKMRED 468


>SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09)
          Length = 225

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 251 LLMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EIKDKNLAKASLAIING 421
           L  +TP  +   IFY+LVG+ L + +   + + + HY K     I+ + L +  +  + G
Sbjct: 30  LTPKTPGGQLFTIFYALVGIPLTLLTLKAMGNHYNHYIKKLIILIETRCLKRTEVKGLEG 89

Query: 422 AILLVD 439
            + L D
Sbjct: 90  KVCLGD 95


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 302 VGVALFVASGAIIIDRFQHYGKSEI 376
           VGV ++   G  ++D  QHY K+E+
Sbjct: 536 VGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)
          Length = 767

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 270 HTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 410
           H+  +  + +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 226 HSVKALLAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -3

Query: 448 EDSINK*DSAIDDGQRGLSQVLVFDLALTIMLESVNNNGTASDEQGNT----DQRIEDVD 281
           ++SIN  D++I+D    +    ++D   +I   S+N+N  + ++  N+    D  I D D
Sbjct: 415 DNSINDNDNSINDNDNSIYDSSIYDNDNSIYDNSINDNDNSINDNDNSINDNDNSINDND 474


>SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 28 FDTSTRLAIIIIKFKFRSESWPS 96
          ++T  +  II IK+ FR+ +WP+
Sbjct: 6  YNTRNKTQIIAIKYSFRARTWPT 28


>SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 28  FDTSTRLAIIIIKFKFRSESWPS 96
           ++T  +  II IK+ FR+ +WP+
Sbjct: 52  YNTRNKTQIIAIKYSFRARTWPT 74


>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 270 HTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 410
           H+  +  + +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 226 HSVKALLAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -1

Query: 426 IAPLMMANEALAKFLSLISLLP*CWNLSIIMAPLA 322
           IAPL  A E+ + ++S ISL    W ++I+MA L+
Sbjct: 164 IAPLRHATESKSSYVSAISL---SWVIAILMASLS 195


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +1

Query: 106 LSSSFWSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRATNADSFTQTDR 285
           +SSS W+  L       T T ++ +++     P P+S     ++  P   +A+   +   
Sbjct: 193 VSSSIWARRLESHQLSETITESLWIKLRPTRLPRPISAVFIGTVYHPPHASAEDNNRLRD 252

Query: 286 HLLFAGRCCLVRR*RC 333
           H+      CL++   C
Sbjct: 253 HIQQVVDACLLQHPDC 268


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 142  RAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRATNADSFT 273
            R+  + + V   +  S+  S  PL GTSS  L     +N DS T
Sbjct: 2154 RSTTAPSVVNSSLSPSSTPSSTPLKGTSSSPLQNMSTSNVDSHT 2197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,635,946
Number of Sequences: 59808
Number of extensions: 394494
Number of successful extensions: 1018
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)