Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0460
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 332  AIIIDRFQHYGKSEIKDKNLAKASLAIINGAILLVDAVLTQRG 460
            A+ I +  H  + + + K LAK   +  +G ++ V+ +L Q+G
Sbjct: 1095 AVQIQQSPHQQQQQQQQKILAKVLTSSNSGQLISVENLLAQKG 1137



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 214 TKVPVTSMPISASAL 170
           T VP+TS+P S++++
Sbjct: 852 TTVPITSLPASSTSI 866



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 151 LSTTTVTMQMRISACSSPVPLSGTSS 228
           LST T T  + ++   + VPL+ +S+
Sbjct: 512 LSTATSTCSLAVAKQQNQVPLTSSSN 537


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 442 CPHATRRLNYVHKIELHNQK 501
           C + T    Y H ++LH +K
Sbjct: 47  CANCTYATKYCHSLKLHLRK 66


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 381 TRTWLRPRW 407
           T+ WLRP W
Sbjct: 225 TKIWLRPDW 233


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 73  FRSESWPSAGCLSSSFW 123
           F S SW +   L  SFW
Sbjct: 306 FPSNSWVAINELQDSFW 322


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 73  FRSESWPSAGCLSSSFW 123
           F S SW +   L  SFW
Sbjct: 274 FPSNSWVAINELQDSFW 290


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 258 CRLLHTNGSTSSIRWSVLPCSSLA 329
           C+L H+N S +     +L C  +A
Sbjct: 226 CKLSHSNASVAGGMEMILLCEKVA 249


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 258 CRLLHTNGSTSSIRWSVLPCSSLA 329
           C+L H+N S +     +L C  +A
Sbjct: 226 CKLSHSNASVAGGMEMILLCEKVA 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,794
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)