Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0460
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19340.1 68418.m02305 expressed protein                             28   5.9  
At3g23840.1 68416.m02997 transferase family protein low similari...    28   5.9  
At4g11655.1 68417.m01863 transmembrane protein, putative contain...    27   7.8  

>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 121 WSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYS 234
           W   LR++   +TTT T   R+S+ S     S TSS S
Sbjct: 160 WKELLRLKKQRTTTTTTASTRVSSLSPSSSSSSTSSSS 197


>At3g23840.1 68416.m02997 transferase family protein low similarity
           to hypersensitivity-related gene [Nicotiana tabacum]
           GI:1171577, acetyl-CoA:benzylalcohol acetyltranferase
           [Clarkia concinna] GI:6166330; contains Pfam profile
           PF02458: Transferase family
          Length = 420

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 454 LREDSINK*DSAIDDGQRGLSQVLVFDLALTIMLESVNNNGTASDEQGNTDQRIEDVDPF 275
           +R D       A+ +GQ   S  + F +A   + E V + G A DE+   D+ ++DV  F
Sbjct: 279 IRSDPKKLKPRAVRNGQMISSIHVDFSVAEASLEEIVKSIGEAKDERVVIDEIVDDVSDF 338

Query: 274 V 272
           +
Sbjct: 339 I 339


>At4g11655.1 68417.m01863 transmembrane protein, putative contains 4
           transmembrane spanning domains, PMID:11152613
          Length = 208

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 245 RGLLMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKD-KNLAKASLAIING 421
           RG+L+  P    I   +  V   L V+S ++ I   QH  +  IK  +N +  S+++   
Sbjct: 127 RGVLISEPLSDYISFIFDQVICYLLVSSSSVAIAWIQHINEDAIKTLRNNSIVSVSMSFS 186

Query: 422 AILLV 436
           A L++
Sbjct: 187 AFLVL 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,759,695
Number of Sequences: 28952
Number of extensions: 258631
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)