Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0459
         (298 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P77085 Cluster: Putative uncharacterized protein; n=4; ...    52   3e-06
UniRef50_Q2EES0 Cluster: Uncharacterized protein ynfO from qin p...    52   3e-06
UniRef50_Q1FM87 Cluster: GGDEF domain; n=1; Clostridium phytofer...    33   1.7  

>UniRef50_P77085 Cluster: Putative uncharacterized protein; n=4;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 64

 Score = 51.6 bits (118), Expect = 3e-06
 Identities = 26/33 (78%), Positives = 26/33 (78%)
 Frame = -3

Query: 101 MSTKNXXXXXXXRNIRFPNQMIEQINIALEQKG 3
           MSTKN       RNIRFPNQMIEQINIALEQKG
Sbjct: 1   MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKG 33


>UniRef50_Q2EES0 Cluster: Uncharacterized protein ynfO from qin
           prophage; n=8; root|Rep: Uncharacterized protein ynfO
           from qin prophage - Escherichia coli (strain K12)
          Length = 77

 Score = 51.6 bits (118), Expect = 3e-06
 Identities = 26/33 (78%), Positives = 26/33 (78%)
 Frame = -3

Query: 101 MSTKNXXXXXXXRNIRFPNQMIEQINIALEQKG 3
           MSTKN       RNIRFPNQMIEQINIALEQKG
Sbjct: 1   MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKG 33


>UniRef50_Q1FM87 Cluster: GGDEF domain; n=1; Clostridium
           phytofermentans ISDg|Rep: GGDEF domain - Clostridium
           phytofermentans ISDg
          Length = 613

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 230 VEAIKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQ 126
           +++I P   I+  +G+VLID   L+++T  DN NQ
Sbjct: 301 IQSIYPESSIHIVSGVVLIDNKNLDIQTYIDNANQ 335


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,964,831
Number of Sequences: 1657284
Number of extensions: 3747342
Number of successful extensions: 6107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6106
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 10380836353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)