Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0459
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   2.4  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    24   5.5  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    24   5.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    23   9.6  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 215 PRQIINYDAGIVLIDLH 165
           PR++I+Y   I LIDLH
Sbjct: 643 PREVIDYQHFIELIDLH 659


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 273  TRKVIMISSTYHNVRGGHQTTSNNQL*RRYRIN*SA 166
            T+ V + S   H+  G H   SNN +  +  +N SA
Sbjct: 1079 TKPVAVTSKNGHSRNGSHAAHSNNVIGTQPHVNVSA 1114


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 256 DIIYISQRAWRPSNHVK*SIM 194
           DI  + QR  RP NH+K  I+
Sbjct: 31  DISIVRQRLGRPGNHLKIGIV 51


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 193 TQVSY*LICINLT*KQLQTIQISDTEYGATSCQRRTEPAEQQPA 62
           + VS   +C+ L   Q+   Q+ D  YG T  +   +  E+QPA
Sbjct: 671 SMVSPETVCL-LESMQVGVRQLEDAGYGKTMDEINDDEDEEQPA 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,016,954
Number of Sequences: 5004
Number of extensions: 15471
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)