Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0459
         (298 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    29   0.86 
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983...    29   0.86 
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305...    27   2.6  
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    26   4.6  
07_01_0218 - 1623373-1625418                                           25   8.0  

>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 151 KQLQTIQISDTEYGATSCQRRTEPAEQQPAT 59
           +QLQ + +   +Y A+  QR T P  Q+PA+
Sbjct: 406 QQLQQLDVKGMQYAASVGQRYTHPHVQEPAS 436


>08_02_0519 -
           18097509-18097726,18097803-18097967,18098095-18098305,
           18099151-18099419,18100915-18101017
          Length = 321

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 139 TIQISDTEYGATSCQRRTEPAEQQPATSAF 50
           T+ +   E+ +T C RR + AEQ  A  A+
Sbjct: 73  TVMVDGEEFSSTFCHRRVKDAEQDAAKVAY 102


>03_05_0859 -
           28329837-28329919,28330062-28330131,28330498-28330549,
           28330671-28330798,28331283-28331483,28332183-28332317,
           28333116-28333275,28333824-28334019,28334070-28334252,
           28334382-28334507,28335090-28335214,28335389-28335541,
           28337267-28337472
          Length = 605

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 42  LVRKADVAGCCSAGSVLR*HEVAPYSVSLI 131
           L   A ++GCC     L  H+  P SVSLI
Sbjct: 417 LTSLASMSGCCQVTVPLGTHDKCPVSVSLI 446


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 285 SPERTRKVIMISSTYHNVRGGHQTTSNNQL*RR 187
           +P R RK +M   TYH+    H   SNN   RR
Sbjct: 80  APRRRRKAMMPVRTYHHHH--HHNNSNNHRLRR 110


>07_01_0218 - 1623373-1625418
          Length = 681

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 221 IKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQRH*IRG 108
           +KP   + +D   VL D+  L     +   N RH + G
Sbjct: 232 VKPLLSVTHDLSTVLADVVYLGFSAATGRVNSRHCVLG 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,495,284
Number of Sequences: 37544
Number of extensions: 97039
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)