Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0459
(298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 26 5.6
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 26 5.6
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 26 5.6
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr... 26 5.6
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 26 5.6
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 26 5.6
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 26 5.6
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 26 5.6
AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine re... 26 5.6
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 25 7.4
Z75712-4|CAB00043.1| 694|Caenorhabditis elegans Hypothetical pr... 25 7.4
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 506 YVDDFLLTYRVFIRDPT 522
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 506 YVDDFLLTYRVFIRDPT 522
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 506 YVDDFLLTYRVFIRDPT 522
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 506 YVDDFLLTYRVFIRDPT 522
>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
protein F33H1.4 protein.
Length = 1385
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 219 DGLHARCDM*MISLSLYGSFPVIRQV 296
D LHARCD+ +SL F VI V
Sbjct: 840 DRLHARCDICQAVVSLNKKFEVIHLV 865
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 383 YVDDFLLTYRVFIRDPT 399
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 506 YVDDFLLTYRVFIRDPT 522
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 506 YVDDFLLTYRVFIRDPT 522
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YVDDIIITLRVLSGDPT 292
YVDD ++T RV DPT
Sbjct: 506 YVDDFLLTYRVFIRDPT 522
>AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine
receptor, class i protein61 protein.
Length = 331
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 105 VAPYSVSLICIV*SCFYVKLMQIN*YDTCVIIDYLTWFDGLHARCDM*MISLS 263
+A ++ SL+CI+ +V ++ I VI++YL LH+ ++ ++ L+
Sbjct: 243 LAQFATSLVCIIPPICFVFVVLIGIDGAQVIVEYLLVIACLHSSLNVTVLILT 295
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 133 QISDTEYGATSCQRRTEPAEQQPATSA 53
Q+S+ EYG + R+ P E ATS+
Sbjct: 267 QVSNEEYGPHTFMRKKVPKEASSATSS 293
>Z75712-4|CAB00043.1| 694|Caenorhabditis elegans Hypothetical
protein K04G2.6 protein.
Length = 694
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 24 VNLFNHLVRKADVAGCCSAGSVLR*HEVAPYSVSLICIV*SCFYVKLMQIN*Y 182
+N N RK + G +A L PY+ L+ + CF+ +QI Y
Sbjct: 59 INSGNSNQRKGGLIGMAAASIALGNKNAPPYTAKLVEPIIPCFHDADLQIRYY 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,748,284
Number of Sequences: 27780
Number of extensions: 90701
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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