Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0459
         (298 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17970.1 68416.m02286 chloroplast outer membrane translocon s...    28   0.97 
At2g35620.1 68415.m04368 leucine-rich repeat transmembrane prote...    26   5.2  
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi...    25   6.9  

>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
           subunit, putative similar to Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profile PF00515 TPR Domain
          Length = 589

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 27  NLFNHLVRKADVAGCCSAGSVLR*HEVAPYSVSLI 131
           N  + L+  A ++GCC     L  HE  P SVS I
Sbjct: 397 NRASSLLSIASISGCCQVTVPLGHHEKCPISVSFI 431


>At2g35620.1 68415.m04368 leucine-rich repeat transmembrane protein
           kinase, putative similar to somatic embryogenesis
           receptor-like kinase 1 (SERK1) [Zea mays]
           gi|13897318|emb|CAC37640; contains leucine rich repeat
           (LRR) domains, Pfam:PF00560; contains protein kinase
           domain, Pfam:PF00069
          Length = 589

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 276 RTRKVIMISSTYHNVRG 226
           +T++VI +S TYH +RG
Sbjct: 71  KTKRVIALSLTYHKLRG 87


>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 630

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 15  KSDVNLFNHLVRKADVAGCCSAGSVL 92
           K DVNL+NH +R A++    SAG +L
Sbjct: 152 KPDVNLYNHYLR-ANLMMGASAGDML 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,280,422
Number of Sequences: 28952
Number of extensions: 80313
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)