Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0458
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 30 0.37
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 29 0.49
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 27 2.0
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 27 2.6
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.5
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.5
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 4.6
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 4.6
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 6.1
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 26 6.1
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 8.0
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 25 8.0
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 8.0
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 506 KYSRNHRALSRLSFFDMSRLSSYGICKRKNPPQGRR 613
K +R HR +S LS ++ SS+ + R N P G R
Sbjct: 65 KKTRKHRLMSELSMYESVHDSSFNLGTRPNSPLGFR 100
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 29.5 bits (63), Expect = 0.49
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 435 LRRSGSGLCFTVTFPDTKVRLENM 364
L + GS +CF + FP+ ++L NM
Sbjct: 148 LGKVGSAICFDIRFPEQAIKLRNM 171
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 320 FFIFKCPSQIVFSLFIFSNR-TFVSGNVTVKHNPLPE-RRNP 439
FFI CP+++V L I +++ T V V H+ PE +NP
Sbjct: 328 FFIIHCPNELVIDLVIENHKWTNAPKPVCVIHSVTPEVYKNP 369
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 287 SLDFCNVFTLFFFIFKCPSQIVFSLF 364
S D C V+ FF + C + IVF+ F
Sbjct: 2 STDLCPVYAPFFGVMGCTAAIVFASF 27
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 307 FHIVLFYLQMSFSNCIFFIHIFQSYLCIWKCYS 405
F +L+ L +S S +FF F+ +L +WK ++
Sbjct: 853 FSFILYNLLISTST-VFFAGFFRRHLMVWKVFA 884
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 37 LPHPVEPMSSRELSTRQGEAIAVGPPSSLR 126
+PHP S +S Q A+ VGPP +R
Sbjct: 558 MPHPNITSPSPSISVTQRPAVNVGPPPYVR 587
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 297 FVMFSHCSFLSSNVLLKLYFLYSYFPIVP 383
F+ F + + L +N+LL + F+Y+Y P P
Sbjct: 279 FIYFENVA-LYTNLLLAIVFVYNYLPSCP 306
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 461 LFHFFNNTFCKSYK*KYSRNHRALSRL 541
L F N+F + + S NHRAL+RL
Sbjct: 271 LIGFMKNSFYQKHGIDLSHNHRALARL 297
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 261 QSLDVKALDLWIFVMFSHCSFLSSNVLLKLYFLYSYFPIVPL 386
++L + DL V+F H S NVL K L + P+ P+
Sbjct: 296 ENLKTRIADLQDMVLFRHGSTGVCNVLAKAMELLNLIPVFPV 337
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 10 DGRFCERLL-LPHPVEPMSSREL 75
DG CE LPHPV+ M + EL
Sbjct: 1165 DGDLCEMYYSLPHPVQEMIANEL 1187
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 241 IRNSSPRYCINKYISFYDN 185
++ S P C N+YI+ YDN
Sbjct: 194 VKRSIPEKCWNEYITAYDN 212
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 1 LLSDGRFCERLLLPHPVEPMSSR 69
LL DGR + + P PV PM+S+
Sbjct: 2 LLRDGRIPQYSIYPLPVPPMNSK 24
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 383 FVSGNVTVKHNPLPERRNPPSN 448
F GNVTVK+ P+P+ P N
Sbjct: 674 FTPGNVTVKYYPVPKVIATPVN 695
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 16 RFCERLLLPHPVEPMSSRELSTRQG 90
RFC RL+LP V+ ++ EL+ R G
Sbjct: 238 RFCNRLMLPMSVQ-SAAAELARRAG 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,860
Number of Sequences: 5004
Number of extensions: 60106
Number of successful extensions: 143
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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