Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0458
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0098 - 13459424-13459704,13459954-13460074                       33   0.17 
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591...    31   0.68 
12_01_0287 - 2152179-2152424,2153300-2153339,2153612-2153831,215...    29   3.6  
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    28   6.3  
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643...    28   6.3  
04_04_0633 - 26771487-26771591,26771708-26771782,26771906-267719...    28   6.3  

>11_04_0098 - 13459424-13459704,13459954-13460074
          Length = 133

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 104 LGRRRA-CELNAPPRRRVNLTSWVWPHD---IVIKRYILIYAIPWT 229
           +GRRRA C   +PPRR    TSW   HD   + IK    +  +PWT
Sbjct: 19  IGRRRAECWAASPPRRS---TSWACGHDGEEVTIKELKPVEPLPWT 61


>02_05_0104 -
           25858414-25858509,25858711-25858782,25859081-25859156,
           25859286-25859334,25859826-25860012,25860164-25860340,
           25860519-25860632
          Length = 256

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -1

Query: 222 GIA*ISIYRFMTISCGHTHDVRLTRLRGGAFSSQARRRPNSYSFSLTCRELTGAHGL 52
           G+   S+++ +T+ CGH  ++    LRG    + A    N   F  +    T  HGL
Sbjct: 40  GVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGL 96


>12_01_0287 -
           2152179-2152424,2153300-2153339,2153612-2153831,
           2153917-2153995,2154087-2154155,2154237-2154329,
           2154411-2154477,2154579-2154640,2154729-2154774,
           2155359-2155404,2155490-2155547,2155717-2155755,
           2155849-2155920,2156067-2156158,2157036-2157135
          Length = 442

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 337 SFSNCIFFIHIFQSYLCIW 393
           + S CI  IH++Q++LC W
Sbjct: 330 AISFCIIHIHVYQNFLCNW 348


>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 135 AFSSQARRRPNSYSFSLTCRELTGAH 58
           A SS +  RP  +SF  T RELTG +
Sbjct: 392 ASSSSSLERPKVHSFGKTARELTGMY 417


>05_04_0366 -
           20663243-20663388,20663467-20663572,20664275-20664367,
           20664520-20664657,20664759-20664886,20664996-20665156,
           20665277-20665367,20665460-20665516,20666288-20666444
          Length = 358

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 128 LNAPPRRRVNLTSWVWPHDIVIKRYILIYAIPWTTVAYVLL 250
           L+APP R++   + VW  D+  +   L+YA      A+VL+
Sbjct: 134 LHAPPERQIESVAEVW--DLATEPAFLLYAAIVLAAAFVLI 172


>04_04_0633 -
           26771487-26771591,26771708-26771782,26771906-26771981,
           26772096-26772144,26772848-26773037,26773119-26773292,
           26773415-26773543
          Length = 265

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 222 GIA*ISIYRFMTISCGHTHDVRLTRLRGGAFSSQARRRPNSYSFSLTCRELTGAHGL 52
           G+   S+++ +T+ CGH  ++    LR G     A    N   F       T  HGL
Sbjct: 45  GVPCSSLFKTVTVRCGHCANLLSVNLR-GLLLPAAASTANQLPFGQALLSPTSPHGL 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,825,160
Number of Sequences: 37544
Number of extensions: 377106
Number of successful extensions: 850
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)