Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0458
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    29   3.3  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    28   5.7  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    28   5.7  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    28   5.7  

>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
 Frame = +2

Query: 116 RACEL--NAPPRRRVN-----LTSWVWPHDIVI 193
           RAC+L  NA P R V+      ++W WPH +V+
Sbjct: 246 RACQLYPNASPSRLVHRMFFIFSTWTWPHPVVL 278


>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +2

Query: 185 IVIKRYILIYAIPWTTVAYVLLVNSSVVR----CQSTGSLDFCNVFTLFFFIFKCPSQIV 352
           IV    + I+ I + T   + ++NS  +      Q+   L FC  F   F + K P    
Sbjct: 170 IVANGQMQIFFIVFMTFTVLSIINSIFLPQSQVSQNQAILPFCETFVNSFKLLKTPRMFC 229

Query: 353 FSLFIF 370
           F++F F
Sbjct: 230 FTIFFF 235


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
 Frame = +2

Query: 122  CELNAPPRRRVNLTSWVWPHDIVIKRYILIYAIPW--TTVAY------VLLVNSSVVRCQ 277
            CEL+   R+ +       PH   I R  L Y + W  T+ A+      ++++N+  + C+
Sbjct: 1078 CELDKNQRKCIEFALKAKPHRRYIPRNRLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACK 1137

Query: 278  ----STGSLDFCNVFTLFF---FIFKCPSQIV 352
                S G  DF +VF L F   F F+   +IV
Sbjct: 1138 HYPSSRGFEDFLDVFNLIFTGVFAFEAVLKIV 1169


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
 Frame = +2

Query: 122  CELNAPPRRRVNLTSWVWPHDIVIKRYILIYAIPW--TTVAY------VLLVNSSVVRCQ 277
            CEL+   R+ +       PH   I R  L Y + W  T+ A+      ++++N+  + C+
Sbjct: 1078 CELDKNQRKCIEFALKAKPHRRYIPRNRLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACK 1137

Query: 278  ----STGSLDFCNVFTLFF---FIFKCPSQIV 352
                S G  DF +VF L F   F F+   +IV
Sbjct: 1138 HYPSSRGFEDFLDVFNLIFTGVFAFEAVLKIV 1169


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
 Frame = +2

Query: 122  CELNAPPRRRVNLTSWVWPHDIVIKRYILIYAIPW--TTVAY------VLLVNSSVVRCQ 277
            CEL+   R+ +       PH   I R  L Y + W  T+ A+      ++++N+  + C+
Sbjct: 1078 CELDKNQRKCIEFALKAKPHRRYIPRNRLQYRVWWFVTSRAFEYVIFLIIVMNTVSLACK 1137

Query: 278  ----STGSLDFCNVFTLFF---FIFKCPSQIV 352
                S G  DF +VF L F   F F+   +IV
Sbjct: 1138 HYPSSRGFEDFLDVFNLIFTGVFAFEAVLKIV 1169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,210
Number of Sequences: 27780
Number of extensions: 342016
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)