BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0458 (708 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g79410.1 68414.m09254 transporter-related low similarity to o... 29 2.3 At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 4.0 At3g31540.1 68416.m04025 hypothetical protein 28 5.3 At2g16750.1 68415.m01921 protein kinase family protein contains ... 28 5.3 At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 28 7.0 At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ... 28 7.0 At1g13280.1 68414.m01542 allene oxide cyclase family protein sim... 27 9.2 >At1g79410.1 68414.m09254 transporter-related low similarity to organic anion transporter 3 [Rattus norvegicus] GI:5545293; contains Pfam profile PF00083: major facilitator superfamily protein Length = 515 Score = 29.5 bits (63), Expect = 2.3 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +1 Query: 289 FGFL*CFHIVLFYLQMSFSNCIFFIHIFQSYLCIWKCYSETQPTPGT 429 FGF IVL L ++F + FI +F W C T P T Sbjct: 36 FGFSQFLQIVLVGLALTFDSQQIFITVFTDAYPTWHCLDHTICNPAT 82 >At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 382 Score = 28.7 bits (61), Expect = 4.0 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -1 Query: 198 RFMTISCGHTHDVRLTRLRGGAFSSQARRRPNSYSFSLTCR 76 RF + S + D R R R ++S RRR S S+S CR Sbjct: 224 RFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCR 264 >At3g31540.1 68416.m04025 hypothetical protein Length = 699 Score = 28.3 bits (60), Expect = 5.3 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +3 Query: 531 YRDYLFSICLGSVVTESAKGRIRLKDGVT*QQDHFLF-YSDSLIAC 665 Y DY F + L V E G++ K G+ + FL D LI+C Sbjct: 267 YTDYFFFVALEDAVLEDLVGKVLTKWGILDRPIRFLEPCPDDLISC 312 >At2g16750.1 68415.m01921 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 617 Score = 28.3 bits (60), Expect = 5.3 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 9 GW*ILRTSTLATPG*AHE 62 GW +LRTSTLATP H+ Sbjct: 203 GWPLLRTSTLATPMVQHQ 220 >At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein similar to SP|Q05022 rRNA biogenesis protein RRP5 {Saccharomyces cerevisiae}; contains Pfam profile PF00575: S1 RNA binding domain Length = 1838 Score = 27.9 bits (59), Expect = 7.0 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%) Frame = +2 Query: 446 N*TS*LFHFFNNTFCKSYK*KYSRNHRALSRLSFFDMS------RLSSYGICKRKNP 598 N T LFH N KS+K +Y++N +R+ F D S LS + +C + P Sbjct: 280 NGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPP 336 >At2g13680.1 68415.m01508 glycosyl transferase family 48 protein contains Pfam profile: PF02364 1,3-beta-glucan synthase Length = 1923 Score = 27.9 bits (59), Expect = 7.0 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +2 Query: 203 ILIYAIPWTTVAYVLLVNSSVVRCQSTGSLDFCNVFTLF-FFIFKCPSQIVFSLFIFSNR 379 I++Y + W + V++V V + S DF +F L F+F IV LF F Sbjct: 1767 IIVYGLSWLVIVAVMIVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKL 1826 Query: 380 T 382 T Sbjct: 1827 T 1827 >At1g13280.1 68414.m01542 allene oxide cyclase family protein similar to ERD12 [GI:15320414], allene oxide cyclase GI:8977961 from [Lycopersicon esculentum]; contains Pfam profile PF06351: Allene oxide cyclase Length = 254 Score = 27.5 bits (58), Expect = 9.2 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 507 STHGITALYRDYLFSICLGSVVTESAKGRIRLKDGVT*QQDHFLFYSDSLIACVP 671 S G Y D +I GS V E A G+++L+ V + + FY + A +P Sbjct: 166 SVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLP 220 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,254,899 Number of Sequences: 28952 Number of extensions: 311198 Number of successful extensions: 676 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 676 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1526202912 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -