Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0458
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79410.1 68414.m09254 transporter-related low similarity to o...    29   2.3  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    29   4.0  
At3g31540.1 68416.m04025 hypothetical protein                          28   5.3  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    28   5.3  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    28   7.0  
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    28   7.0  
At1g13280.1 68414.m01542 allene oxide cyclase family protein sim...    27   9.2  

>At1g79410.1 68414.m09254 transporter-related low similarity to
           organic anion transporter 3 [Rattus norvegicus]
           GI:5545293; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 515

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 289 FGFL*CFHIVLFYLQMSFSNCIFFIHIFQSYLCIWKCYSETQPTPGT 429
           FGF     IVL  L ++F +   FI +F      W C   T   P T
Sbjct: 36  FGFSQFLQIVLVGLALTFDSQQIFITVFTDAYPTWHCLDHTICNPAT 82


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 198 RFMTISCGHTHDVRLTRLRGGAFSSQARRRPNSYSFSLTCR 76
           RF + S   + D R  R R  ++S   RRR  S S+S  CR
Sbjct: 224 RFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCR 264


>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 531 YRDYLFSICLGSVVTESAKGRIRLKDGVT*QQDHFLF-YSDSLIAC 665
           Y DY F + L   V E   G++  K G+  +   FL    D LI+C
Sbjct: 267 YTDYFFFVALEDAVLEDLVGKVLTKWGILDRPIRFLEPCPDDLISC 312


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 9   GW*ILRTSTLATPG*AHE 62
           GW +LRTSTLATP   H+
Sbjct: 203 GWPLLRTSTLATPMVQHQ 220


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
           similar to SP|Q05022 rRNA biogenesis protein RRP5
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00575: S1 RNA binding domain
          Length = 1838

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = +2

Query: 446 N*TS*LFHFFNNTFCKSYK*KYSRNHRALSRLSFFDMS------RLSSYGICKRKNP 598
           N T  LFH  N    KS+K +Y++N    +R+ F D S       LS + +C +  P
Sbjct: 280 NGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPP 336


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 203  ILIYAIPWTTVAYVLLVNSSVVRCQSTGSLDFCNVFTLF-FFIFKCPSQIVFSLFIFSNR 379
            I++Y + W  +  V++V   V   +   S DF  +F L   F+F     IV  LF F   
Sbjct: 1767 IIVYGLSWLVIVAVMIVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKL 1826

Query: 380  T 382
            T
Sbjct: 1827 T 1827


>At1g13280.1 68414.m01542 allene oxide cyclase family protein
           similar to ERD12 [GI:15320414], allene oxide cyclase
           GI:8977961 from [Lycopersicon esculentum]; contains Pfam
           profile PF06351: Allene oxide cyclase
          Length = 254

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 507 STHGITALYRDYLFSICLGSVVTESAKGRIRLKDGVT*QQDHFLFYSDSLIACVP 671
           S  G    Y D   +I  GS V E A G+++L+  V   +  + FY   + A +P
Sbjct: 166 SVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLP 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,899
Number of Sequences: 28952
Number of extensions: 311198
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)