Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0457
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0455 - 3379727-3381058                                           29   3.8  
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667...    27   8.7  
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602...    27   8.7  

>01_01_0455 - 3379727-3381058
          Length = 443

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 246 CRHSALCFHYYDKKQNVIIFQLFNKHTKIISQLRLHIVYVIP*R*NKTGNFRL 88
           C H +   +Y DK   V+ F L ++  + + Q    +V ++P   N   N+RL
Sbjct: 221 CLHWSFRTNYLDKPHGVLSFSLADESFRRVPQPPFSMVDLVPVHLNGVRNYRL 273


>04_04_1312 +
           32565447-32565585,32566008-32566060,32566139-32566771,
           32566844-32566972,32567052-32567144,32567220-32567336,
           32567412-32567512,32567603-32567870,32568236-32568265,
           32568361-32568572,32568650-32568731,32568804-32569555,
           32569640-32569811,32570412-32570498,32570578-32570895,
           32570982-32571107
          Length = 1103

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 237 SALCFHYYDKKQNVIIFQLFNKHTKIISQLRLHIVYVIP 121
           ++LC     + ++V++  L  KH  +ISQ  LHI+  +P
Sbjct: 117 ASLCKPAKVQNKDVVVLDLDPKHPLVISQEALHILTGLP 155


>04_04_1311 -
           32559549-32559674,32559761-32560078,32560158-32560244,
           32560845-32561016,32561101-32561852,32561925-32562006,
           32562084-32562295,32562391-32562420,32562786-32563074,
           32563143-32563243,32563319-32563435,32563511-32563603,
           32563683-32563811,32563884-32564516,32564765-32564844,
           32565152-32565164
          Length = 1077

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 237 SALCFHYYDKKQNVIIFQLFNKHTKIISQLRLHIVYVIP 121
           ++LC     + ++V++  L  KH  +ISQ  LHI+  +P
Sbjct: 84  ASLCKPAKVQNKDVVVLDLDPKHPLVISQEALHILTGLP 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,745
Number of Sequences: 37544
Number of extensions: 152275
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)