Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0456
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       90   2e-20
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 89.8 bits (213), Expect = 2e-20
 Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 4/85 (4%)
 Frame = +2

Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII--EQIRP--DRQTLMW 421
           +TPGRL+DF+EKG        +LVLDEADRMLDMGF P I K++  E + P  +RQTLM+
Sbjct: 329 ATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMF 388

Query: 422 SATWPKEVKKLAEDYLGDYIQINIG 496
           SAT+P EV+ LA  +L +Y+ + +G
Sbjct: 389 SATFPDEVQHLARRFLNNYLFLAVG 413



 Score = 45.2 bits (102), Expect = 7e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)
 Frame = +1

Query: 553 HEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 732
           ++K++ L  +L+    S   G  T++FVE K+KA+ I+  +    +P   +HGD+ Q++R
Sbjct: 432 NKKKDLLKEILERENDSGTLGG-TLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQR 490

Query: 733 DEVLYQF 753
           +E L  F
Sbjct: 491 EEALADF 497



 Score = 41.5 bits (93), Expect = 8e-06
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +3

Query: 3   QTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 170
           QTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S
Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300

Query: 171 YVRNTCVFGGAPKREQARDLERGVEIVI 254
            ++    +GG     Q   L  G  I++
Sbjct: 301 ILKTVVAYGGTSVMHQRGKLSAGCHILV 328


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 637 ETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 738
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 487  QYRIITTSANHNILQIVDICQEHEKENKL 573
            Q  I+T  A  +ILQ  +I Q+  +++ L
Sbjct: 987  QQTIVTNQAGKSILQTANIKQQSPQQHVL 1015


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 550 EHEKENKLNVLLQEIG 597
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,155
Number of Sequences: 438
Number of extensions: 4861
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)