Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0456
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 128 3e-30
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 128 3e-30
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 126 2e-29
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 112 2e-25
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 111 6e-25
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 109 2e-24
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 109 2e-24
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 109 2e-24
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 107 8e-24
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 101 7e-22
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 101 7e-22
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 101 7e-22
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 98 5e-21
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 97 8e-21
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 97 8e-21
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 84 8e-17
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 81 6e-16
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 78 5e-15
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 78 7e-15
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 77 1e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 75 5e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 75 7e-14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 75 7e-14
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 74 1e-13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 74 1e-13
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 71 8e-13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 71 8e-13
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 65 5e-11
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 64 1e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 64 1e-10
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 64 1e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 63 2e-10
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 61 7e-10
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 61 9e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 60 1e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 60 1e-09
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 60 2e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 60 2e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 60 2e-09
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 60 2e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 59 3e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 59 3e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 59 3e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 59 4e-09
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 59 4e-09
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 58 5e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 58 5e-09
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 58 5e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 58 6e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 56 2e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 56 2e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 52 3e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 52 3e-07
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 51 9e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 51 9e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 51 9e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 48 7e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 46 3e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 46 4e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 3e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.012
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 37 0.012
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 37 0.017
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 36 0.029
At2g28600.1 68415.m03476 expressed protein 33 0.15
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 30 1.4
At4g08250.1 68417.m01361 scarecrow transcription factor family p... 29 3.3
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 28 5.8
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 5.8
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.8
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 28 5.8
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 128 bits (310), Expect = 3e-30
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATW
Sbjct: 294 ATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATW 353
Query: 434 PKEVKKLAEDYLGDYIQINIGSLQL 508
P+EV+ LA +L D + IGS L
Sbjct: 354 PREVETLARQFLRDPYKAIIGSTDL 378
Score = 118 bits (285), Expect = 3e-27
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
TC++GGAPK Q RDL RGVEIVI
Sbjct: 270 TCIYGGAPKGPQIRDLRRGVEIVI 293
Score = 80.2 bits (189), Expect = 1e-15
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Frame = +1
Query: 484 DQYRIITTS----ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRK 651
D Y+ I S AN +I Q+++I EK N+L LL+++ G+K +IFVETKR
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRG 422
Query: 652 AENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
+ ++R +R GWPA+ +HGDKTQ ERD VL +F
Sbjct: 423 CDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEF 456
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 128 bits (310), Expect = 3e-30
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATW
Sbjct: 294 ATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATW 353
Query: 434 PKEVKKLAEDYLGDYIQINIGSLQL 508
P+EV+ LA +L D + IGS L
Sbjct: 354 PREVETLARQFLRDPYKAIIGSTDL 378
Score = 118 bits (285), Expect = 3e-27
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
TC++GGAPK Q RDL RGVEIVI
Sbjct: 270 TCIYGGAPKGPQIRDLRRGVEIVI 293
Score = 80.2 bits (189), Expect = 1e-15
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Frame = +1
Query: 484 DQYRIITTS----ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRK 651
D Y+ I S AN +I Q+++I EK N+L LL+++ G+K +IFVETKR
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRG 422
Query: 652 AENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
+ ++R +R GWPA+ +HGDKTQ ERD VL +F
Sbjct: 423 CDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEF 456
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 126 bits (303), Expect = 2e-29
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRLID +E TNL+R TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATW
Sbjct: 228 ATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATW 287
Query: 434 PKEVKKLAEDYLGDYIQINIGSLQL 508
PKEV++L++ +L + ++ IGS L
Sbjct: 288 PKEVEQLSKKFLYNPYKVIIGSSDL 312
Score = 125 bits (301), Expect = 4e-29
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
TC++GG PK Q RDL++GVEIVI
Sbjct: 204 TCIYGGVPKGPQVRDLQKGVEIVI 227
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/81 (45%), Positives = 55/81 (67%)
Frame = +1
Query: 511 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 690
AN I QIVD+ E +K NKL LL++I G++ ++F++TK+ + I+R +R GW
Sbjct: 314 ANRAIRQIVDVISESQKYNKLVKLLEDIMD----GSRILVFLDTKKGCDQITRQLRMDGW 369
Query: 691 PAVCMHGDKTQQERDEVLYQF 753
PA+ +HGDK+Q ERD VL +F
Sbjct: 370 PALSIHGDKSQAERDWVLSEF 390
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 112 bits (270), Expect = 2e-25
Identities = 52/81 (64%), Positives = 65/81 (80%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRL D LE + Q+ + LVLDEADRMLDMGFEPQIRKI+ +I P RQTLM++ATW
Sbjct: 563 ATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATW 622
Query: 434 PKEVKKLAEDYLGDYIQINIG 496
PKEV+K+A D L + +Q+NIG
Sbjct: 623 PKEVRKIASDLLVNPVQVNIG 643
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
TC++GGAPK Q ++LERG +IV+
Sbjct: 539 TCLYGGAPKGPQLKELERGADIVV 562
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/87 (44%), Positives = 57/87 (65%)
Frame = +1
Query: 493 RIITTSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRN 672
R+ +AN I Q V++ + EKE +L +L+ SQE G+K IIF TKR ++++R+
Sbjct: 644 RVDELAANKAITQYVEVVPQMEKERRLEQILR----SQERGSKVIIFCSTKRLCDHLARS 699
Query: 673 IRRYGWPAVCMHGDKTQQERDEVLYQF 753
+ R+ + AV +HGDKTQ ERD VL QF
Sbjct: 700 VGRH-FGAVVIHGDKTQGERDWVLNQF 725
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 111 bits (266), Expect = 6e-25
Identities = 51/83 (61%), Positives = 66/83 (79%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRL D LE +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ RQTLM++ATW
Sbjct: 357 ATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATW 416
Query: 434 PKEVKKLAEDYLGDYIQINIGSL 502
PKEV+K+A D L + Q+NIG++
Sbjct: 417 PKEVRKIAADLLVNPAQVNIGNV 439
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
C++GGAPK Q +++ERGV+IV+
Sbjct: 333 ACLYGGAPKGPQLKEIERGVDIVV 356
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +1
Query: 511 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 690
AN +I Q +++ EK ++L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 444 ANKSITQTIEVLAPMEKHSRLEQILR----SQEPGSKIIIFCSTKRMCDQLARNLTR-TF 498
Query: 691 PAVCMHGDKTQQERDEVLYQF 753
A +HGDK+Q ERD+VL QF
Sbjct: 499 GAAAIHGDKSQAERDDVLNQF 519
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (262), Expect = 2e-24
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATW
Sbjct: 286 ATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATW 345
Query: 434 PKEVKKLAEDYLGDYIQINIGSL 502
PK V+K+A D L + Q+NIG++
Sbjct: 346 PKGVRKIAADLLVNPAQVNIGNV 368
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/84 (53%), Positives = 58/84 (69%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
TC++GGAPK Q RDLERG +IV+
Sbjct: 262 TCLYGGAPKGPQLRDLERGADIVV 285
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/81 (44%), Positives = 52/81 (64%)
Frame = +1
Query: 511 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 690
AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-F 427
Query: 691 PAVCMHGDKTQQERDEVLYQF 753
A +HGDK+Q ERD VL QF
Sbjct: 428 GAAAIHGDKSQPERDNVLNQF 448
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (262), Expect = 2e-24
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATW
Sbjct: 286 ATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATW 345
Query: 434 PKEVKKLAEDYLGDYIQINIGSL 502
PK V+K+A D L + Q+NIG++
Sbjct: 346 PKGVRKIAADLLVNPAQVNIGNV 368
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/84 (53%), Positives = 58/84 (69%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
TC++GGAPK Q RDLERG +IV+
Sbjct: 262 TCLYGGAPKGPQLRDLERGADIVV 285
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/81 (44%), Positives = 52/81 (64%)
Frame = +1
Query: 511 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 690
AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-F 427
Query: 691 PAVCMHGDKTQQERDEVLYQF 753
A +HGDK+Q ERD VL QF
Sbjct: 428 GAAAIHGDKSQPERDNVLNQF 448
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 109 bits (262), Expect = 2e-24
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATW
Sbjct: 286 ATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATW 345
Query: 434 PKEVKKLAEDYLGDYIQINIGSL 502
PK V+K+A D L + Q+NIG++
Sbjct: 346 PKGVRKIAADLLVNPAQVNIGNV 368
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/84 (53%), Positives = 58/84 (69%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
TC++GGAPK Q RDLERG +IV+
Sbjct: 262 TCLYGGAPKGPQLRDLERGADIVV 285
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/81 (44%), Positives = 52/81 (64%)
Frame = +1
Query: 511 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 690
AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-F 427
Query: 691 PAVCMHGDKTQQERDEVLYQF 753
A +HGDK+Q ERD VL QF
Sbjct: 428 GAAAIHGDKSQPERDNVLNQF 448
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 107 bits (257), Expect = 8e-24
Identities = 48/83 (57%), Positives = 64/83 (77%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRLID L+ + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT
Sbjct: 357 ATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATM 416
Query: 434 PKEVKKLAEDYLGDYIQINIGSL 502
P +V+KLA + L D I++ +G +
Sbjct: 417 PWKVEKLAREILSDPIRVTVGEV 439
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
+ V+GG K EQ ++L+ G EIV+
Sbjct: 333 SAVYGGMSKHEQFKELKAGCEIVV 356
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 101 bits (241), Expect = 7e-22
Identities = 48/85 (56%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPD---RQTLMW 421
+TPGRL D LE+G +LQ +L LDEADRMLDMGFEPQIRKI++Q+ P RQT+++
Sbjct: 280 ATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLF 339
Query: 422 SATWPKEVKKLAEDYLGDYIQINIG 496
SAT+P+E+++LA D+L +YI + +G
Sbjct: 340 SATFPREIQRLASDFLSNYIFLAVG 364
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 167
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 168 SYVRNTCVFGGAPKREQARDLERGVEIVI 254
+ V+ +GG P +Q R+LERGV+I++
Sbjct: 251 TGVKVVVAYGGTPVNQQIRELERGVDILV 279
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +1
Query: 508 SANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVETKRKAENISRNIRR 681
S+ I+Q V+ + +K + L LL Q +Q A T++FVETK+ A+++ +
Sbjct: 368 SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCI 427
Query: 682 YGWPAVCMHGDKTQQERDEVLYQF 753
G+PA +HGD++QQER+ L F
Sbjct: 428 NGFPATTIHGDRSQQEREVALRSF 451
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 101 bits (241), Expect = 7e-22
Identities = 47/83 (56%), Positives = 64/83 (77%), Gaps = 3/83 (3%)
Frame = +2
Query: 257 TPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 427
TPGR+ID L + TNL+R TYLV+DEADRM DMGFEPQI +I++ IRPDRQT+++SA
Sbjct: 526 TPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 585
Query: 428 TWPKEVKKLAEDYLGDYIQINIG 496
T+P++V+ LA L ++I +G
Sbjct: 586 TFPRQVETLARKVLNKPVEIQVG 608
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/84 (48%), Positives = 55/84 (65%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
V+GG+ +Q +L+RG EIV+
Sbjct: 501 VPVYGGSGVAQQISELKRGTEIVV 524
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 101 bits (241), Expect = 7e-22
Identities = 48/85 (56%), Positives = 66/85 (77%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMW 421
+TPGRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQTL++
Sbjct: 293 ATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLF 352
Query: 422 SATWPKEVKKLAEDYLGDYIQINIG 496
SAT+P+E+++LA D+L +YI + +G
Sbjct: 353 SATFPREIQRLAADFLANYIFLAVG 377
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 167
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 168 SYVRNTCVFGGAPKREQARDLERGVEIVI 254
+ V+ +GG P +Q R+LERGV+I++
Sbjct: 264 TGVKVVVAYGGTPINQQLRELERGVDILV 292
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +1
Query: 508 SANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVETKRKAENISRNIRR 681
S+ I+Q V+ + +K + L LL Q Q A T++FVETKR A+++ +
Sbjct: 381 SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCI 440
Query: 682 YGWPAVCMHGDKTQQERDEVLYQF 753
G+PA +HGD+TQQER+ L F
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAF 464
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 98.3 bits (234), Expect = 5e-21
Identities = 46/83 (55%), Positives = 64/83 (77%), Gaps = 3/83 (3%)
Frame = +2
Query: 257 TPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 427
TPGR+ID L + TNL+R T+LV+DEADRM DMGFEPQI +II+ IRP+RQT+++SA
Sbjct: 659 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 718
Query: 428 TWPKEVKKLAEDYLGDYIQINIG 496
T+P++V+ LA L ++I +G
Sbjct: 719 TFPRQVETLARKVLNKPVEIQVG 741
Score = 91.5 bits (217), Expect = 5e-19
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
V+GG+ +Q +L+RG EIV+
Sbjct: 634 VPVYGGSGVAQQISELKRGTEIVV 657
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/80 (27%), Positives = 48/80 (60%)
Frame = +1
Query: 514 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWP 693
N +I Q+V++ E ++ +L L+ +G+ E G K ++FV+++ K + + R++ + +P
Sbjct: 747 NKDITQLVEVRPESDRFLRL---LELLGEWSEKG-KILVFVQSQEKCDALYRDMIKSSYP 802
Query: 694 AVCMHGDKTQQERDEVLYQF 753
+ +HG K Q +R+ + F
Sbjct: 803 CLSLHGGKDQTDRESTISDF 822
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 97.5 bits (232), Expect = 8e-21
Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMW 421
+TPGRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++
Sbjct: 285 ATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLF 344
Query: 422 SATWPKEVKKLAEDYLGDYIQINIG 496
SAT+P ++++LA D++ +YI + +G
Sbjct: 345 SATFPSQIQRLAADFMSNYIFLAVG 369
Score = 68.9 bits (161), Expect = 3e-12
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 167
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 168 SYVRNTCVFGGAPKREQARDLERGVEIVI 254
+ V+ +GG P +Q R+LERG +I++
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELERGCDILV 284
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/82 (37%), Positives = 48/82 (58%)
Frame = +1
Query: 508 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 687
S+ I Q V+ QE +K + L LL ++Q+ + T++FVETKR A+ + +
Sbjct: 373 SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 432
Query: 688 WPAVCMHGDKTQQERDEVLYQF 753
+PA +HGD+TQQER+ L F
Sbjct: 433 FPATSIHGDRTQQEREVALRSF 454
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 97.5 bits (232), Expect = 8e-21
Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMW 421
+TPGRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++
Sbjct: 285 ATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLF 344
Query: 422 SATWPKEVKKLAEDYLGDYIQINIG 496
SAT+P ++++LA D++ +YI + +G
Sbjct: 345 SATFPSQIQRLAADFMSNYIFLAVG 369
Score = 68.9 bits (161), Expect = 3e-12
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 167
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 168 SYVRNTCVFGGAPKREQARDLERGVEIVI 254
+ V+ +GG P +Q R+LERG +I++
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELERGCDILV 284
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/82 (37%), Positives = 48/82 (58%)
Frame = +1
Query: 508 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 687
S+ I Q V+ QE +K + L LL ++Q+ + T++FVETKR A+ + +
Sbjct: 373 SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 432
Query: 688 WPAVCMHGDKTQQERDEVLYQF 753
+PA +HGD+TQQER+ L F
Sbjct: 433 FPATSIHGDRTQQEREVALRSF 454
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 84.2 bits (199), Expect = 8e-17
Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGRL D +E L +++VLDEADRMLDMGFE +R I+ RQ +M+SATWP
Sbjct: 248 TPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWP 307
Query: 437 KEVKKLAEDYLG-DYIQINIGSLQL 508
+V KLA++++ + I++ IGS+ L
Sbjct: 308 LDVHKLAQEFMDPNPIKVIIGSVDL 332
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 170
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 171 YVRNTCVFGGAPKREQARDLERGVEIVI 254
+++ CV+GG+ K Q + GV+IVI
Sbjct: 219 GLKSICVYGGSSKGPQISAIRSGVDIVI 246
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/85 (32%), Positives = 53/85 (62%)
Frame = +1
Query: 499 ITTSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIR 678
+ +ANH+++QI+++ E ++ +L LL++ +SQ+ + ++F K +AE + R ++
Sbjct: 330 VDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKN--RVLVFALYKVEAERLERFLQ 387
Query: 679 RYGWPAVCMHGDKTQQERDEVLYQF 753
+ GW AV +HG+K Q ER L F
Sbjct: 388 QRGWKAVSIHGNKAQSERTRSLSLF 412
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 81.4 bits (192), Expect = 6e-16
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRL D L K +L C YL LDEADR++D+GFE IR++ + + RQTL++SAT
Sbjct: 284 ATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATM 343
Query: 434 PKEVKKLAEDYLGDYIQINIG 496
P +++ A L + +N+G
Sbjct: 344 PTKIQIFARSALVKPVTVNVG 364
Score = 61.3 bits (142), Expect = 7e-10
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 164
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q ++Q A
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVE 251
Query: 165 TSY--VRNTCVFGGAPKREQARDLERGVEIVI 254
Y +R+ GG R Q ++RGV IV+
Sbjct: 252 AGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVV 283
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +1
Query: 508 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 687
+AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K ++I + G
Sbjct: 368 AANLDVIQEVEYVKQ---EAKIVYLLECLQKTSPP---VLIFCENKADVDDIHEYLLLKG 421
Query: 688 WPAVCMHGDKTQQERDEVLYQF 753
AV +HG K Q++R+ + F
Sbjct: 422 VEAVAIHGGKDQEDREYAISSF 443
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 78.2 bits (184), Expect = 5e-15
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR+ID +E + L YLVLDEAD+ML +GFE + I+E + RQ++++SAT P
Sbjct: 235 TPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMP 294
Query: 437 KEVKKLAEDYLGDYIQINIGSLQLPQITTFFKL 535
VKKLA YL + + I++ Q ++ KL
Sbjct: 295 TWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL 327
Score = 57.2 bits (132), Expect = 1e-08
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGHT 167
+TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 147 KTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SA 204
Query: 168 SYVRNTCVFGGAPKREQARDLERGVEIVI 254
Y+ CV+GG Q L RGV++V+
Sbjct: 205 PYLSTVCVYGGVSYTIQQSALTRGVDVVV 233
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 613 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
G KTI+F +TKR A+ +S + +HGD +Q +R+ L F
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAF 396
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 77.8 bits (183), Expect = 7e-15
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 173
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 174 VRNTCVFGGAPKREQARDLERGVEIVI 254
R T + GG EQ + +G EIVI
Sbjct: 418 FRVTSIVGGQSIEEQGLKITQGCEIVI 444
Score = 75.4 bits (177), Expect = 4e-14
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 17/99 (17%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD----- 403
+TPGRLID LE+ L +C Y+VLDEADRM+DMGFEPQ+ +++ ++P+
Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE 504
Query: 404 -------RQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 499
R T M+SAT P V++LA YL + + + IG+
Sbjct: 505 LDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT 543
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/77 (33%), Positives = 45/77 (58%)
Frame = +1
Query: 523 ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVC 702
I Q V + +E EK +L LL E+G+ I+FV TK+ ++I++N+ + G+
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKT-----AIVFVNTKKNCDSIAKNLDKAGYRVTT 605
Query: 703 MHGDKTQQERDEVLYQF 753
+HG K+Q++R+ L F
Sbjct: 606 LHGGKSQEQREISLEGF 622
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TPGRL D L K +L C L LDEADR++D+GFE IR + + + RQTL++SAT
Sbjct: 235 ATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATM 294
Query: 434 PKEVKKLAEDYLGDYIQINIG 496
P +++ A L + +N+G
Sbjct: 295 PAKIQIFATSALVKPVTVNVG 315
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 164
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 165 TSY--VRNTCVFGGAPKREQARDLERGVEIVI 254
Y +R+ GG R Q +++GV IV+
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVV 234
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +1
Query: 508 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 687
+AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K ++I + G
Sbjct: 319 AANLDVIQEVEYVKQ---EAKIVYLLECLQKTTPP---VLIFCENKADVDDIHEYLLLKG 372
Query: 688 WPAVCMHGDKTQQERDEVLYQF 753
AV +HG K Q++RD + F
Sbjct: 373 VEAVAIHGGKDQEDRDYAISLF 394
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/79 (39%), Positives = 54/79 (68%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR+ID +++G NL ++VLDEAD+ML +GF + I+E++ RQ++M+SAT P
Sbjct: 233 TPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMP 292
Query: 437 KEVKKLAEDYLGDYIQINI 493
++ L + YL + + +++
Sbjct: 293 SWIRSLTKKYLNNPLTVDL 311
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 179
+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 149 RTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAPSL 205
Query: 180 NT-CVFGGAPKREQARDLERGVEIVI 254
+T C++GG P +Q R L+ GV++ +
Sbjct: 206 DTICLYGGTPIGQQMRQLDYGVDVAV 231
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 613 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
G K I+F +TKR A+ +S + R + +HGD +Q +R+ L F
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGF 394
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 74.5 bits (175), Expect = 7e-14
Identities = 31/79 (39%), Positives = 54/79 (68%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR+ID +++G NL ++VLDEAD+ML +GF + I++++ RQ++M+SAT P
Sbjct: 245 TPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMP 304
Query: 437 KEVKKLAEDYLGDYIQINI 493
++ L + YL + + I++
Sbjct: 305 SWIRSLTKKYLNNPLTIDL 323
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 179
+TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 161 RTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAPSL 217
Query: 180 NT-CVFGGAPKREQARDLERGVEIVI 254
+T C++GG P +Q R+L G+++ +
Sbjct: 218 DTICLYGGTPIGQQMRELNYGIDVAV 243
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 613 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
G K I+F +TKR A+ ++ + + + +HGD +Q +R+ L F
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGF 406
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 74.5 bits (175), Expect = 7e-14
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR++D +KG L+ C LV+DEAD++L + F+P I ++I+ + RQ LM+SAT+P
Sbjct: 279 TPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFP 338
Query: 437 KEVKKLAEDYLGDYIQINI-GSLQLPQITTFF 529
VK + YL IN+ L L +T ++
Sbjct: 339 VTVKSFKDRYLKKPYIINLMDQLTLMGVTQYY 370
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 199 KNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEV 253
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
GG R+ L + V +++
Sbjct: 254 MVTTGGTSLRDDIMRLYQPVHLLV 277
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR++D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P
Sbjct: 256 TPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFP 315
Query: 437 KEVKKLAEDYLGDYIQINI-GSLQLPQITTFF 529
VK + +L + IN+ L L IT F+
Sbjct: 316 VTVKDFKDRFLTNPYVINLMDELTLKGITQFY 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G ++
Sbjct: 176 KNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQV 230
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
GG ++ L + V +++
Sbjct: 231 MVTTGGTSLKDDIMRLYQPVHLLV 254
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR++D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P
Sbjct: 256 TPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFP 315
Query: 437 KEVKKLAEDYLGDYIQINI-GSLQLPQITTFF 529
VK + +L + IN+ L L IT F+
Sbjct: 316 VTVKDFKDRFLTNPYVINLMDELTLKGITQFY 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G ++
Sbjct: 176 KNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQV 230
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
GG ++ L + V +++
Sbjct: 231 MVTTGGTSLKDDIMRLYQPVHLLV 254
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR++D +KG L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P
Sbjct: 249 TPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFP 308
Query: 437 KEVKKLAEDYLGDYIQINI-GSLQLPQITTFF 529
VK + +L IN+ L L +T ++
Sbjct: 309 VTVKAFKDRHLRKPYVINLMDQLTLMGVTQYY 340
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQV 223
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
GG R+ L + V +++
Sbjct: 224 MVTTGGTSLRDDIMRLHQPVHLLV 247
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR++D +KG L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P
Sbjct: 249 TPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFP 308
Query: 437 KEVKKLAEDYLGDYIQINI-GSLQLPQITTFF 529
VK + +L IN+ L L +T ++
Sbjct: 309 VTVKAFKDRHLRKPYVINLMDQLTLMGVTQYY 340
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQV 223
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
GG R+ L + V +++
Sbjct: 224 MVTTGGTSLRDDIMRLHQPVHLLV 247
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 424
+TPGRL D +E T L+ LVLDEAD +LDMGF I +II + +RQT ++S
Sbjct: 188 ATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFS 247
Query: 425 ATWPKEVKKL 454
AT P+EV+++
Sbjct: 248 ATVPEEVRQI 257
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 134
+TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 99 KTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/72 (41%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 424
+TPGRL+D +E T+ L ++DEAD +LD+GF+ + KII+ + RQ+L++S
Sbjct: 510 ATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFS 569
Query: 425 ATWPKEVKKLAE 460
AT PKEV+++++
Sbjct: 570 ATIPKEVRRVSQ 581
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 137
+TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 420 KTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Frame = +2
Query: 254 STPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 427
+TPGRL D + KG + L+ YLVLDEADR+L+ FE + +I+E+I +R+T ++SA
Sbjct: 145 ATPGRLWDHMSDTKGFS-LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSA 203
Query: 428 TWPKEVKKLAEDYLGDYIQINIGS 499
T K+V+KL L + ++I S
Sbjct: 204 TMTKKVRKLQRACLRNPVKIEAAS 227
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 161
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 162 HTSYVRNTCVFGGAPKREQARDLERGVEIVI 254
+R + GG + +Q L + +++
Sbjct: 114 ADISLRCAVLVGGIDRMQQTIALGKRPHVIV 144
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 424
+TPGRL+D +E T+ L ++DEAD +LD+GF + KII+ + RQ+L++S
Sbjct: 463 ATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFS 522
Query: 425 ATWPKEVKKLAE 460
AT PKEV+++++
Sbjct: 523 ATIPKEVRRVSQ 534
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 137
+TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 373 KTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 424
+TPGRL D +E + T L LVLDEAD +LDMGF I +II + RQT ++S
Sbjct: 516 ATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFS 575
Query: 425 ATWPKEVKKL 454
AT P+EV+++
Sbjct: 576 ATVPEEVRQI 585
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 134
+TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 427 KTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 61.3 bits (142), Expect = 7e-10
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +2
Query: 182 HVCVWWCS*KRASPGLGEGSRNSHSTPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 361
H C+ S L G TPGR+ D +++G+ + LVLDE+D ML G
Sbjct: 122 HACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGL 181
Query: 362 EPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 487
+ QI + + D Q + SAT P+E+ ++ E ++ D ++I
Sbjct: 182 KDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRI 223
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 619 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
+ IIF T++K + ++ +R + MHGDK Q+ERD+++ QF
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQF 307
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 QTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 173
Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT+
Sbjct: 67 QSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTNI 119
Query: 174 VRNTCVFGGAPKREQARDLERGVEIV 251
+ C+ GG E + LERGV V
Sbjct: 120 QAHACI-GGKSIGEDIKKLERGVHAV 144
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 60.9 bits (141), Expect = 9e-10
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 233 EGSRNSHSTPGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 409
EG TPGRL D +E+ + + L+LDEADR+L+MGF+ Q+ II ++ R+
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200
Query: 410 TLMWSATWPKEVKKLAEDYLGDYIQINI 493
T ++SAT + V++LA+ L + +++ +
Sbjct: 201 TGLFSATQTEGVEELAKAGLRNPVRVEV 228
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 173
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 174 VRNTCVFGGAPKREQARDL-ERGVEIVI 254
V + + GG + + + E G ++I
Sbjct: 120 VNSVLLVGGREVKADMKIIEEEGCNVLI 147
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFGHT 167
+TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G +
Sbjct: 141 RTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGS 200
Query: 168 SYVRNTCVFGGAPKREQARDLERGVEIVI 254
+ + C++GG Q L+RGV+IV+
Sbjct: 201 LGLSSCCLYGGDSYPVQEGKLKRGVDIVV 229
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSAT 430
TPGR+ D +E+ + + VLDEAD ML MGF + I+ ++ QTL++SAT
Sbjct: 231 TPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSAT 290
Query: 431 WPKEVKKLAEDYL 469
P VK ++ +L
Sbjct: 291 LPSWVKNISNRFL 303
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +2
Query: 182 HVCVWWCS*KRASPGLGEGSRNSHSTPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 361
H C+ S L G TPGR+ D +++ + + L+LDE+D ML GF
Sbjct: 135 HACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGF 194
Query: 362 EPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--GSLQLPQITTFF 529
+ QI + + PD Q + SAT P E+ ++ ++ + ++I + L L I FF
Sbjct: 195 KDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFF 252
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 619 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
+ +IF TKRK + +S +R + + MHGD Q+ERD ++ +F
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEF 320
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 96 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIV 251
AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVV 157
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Frame = +2
Query: 260 PGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
PGRL+ +++ T N + + L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT
Sbjct: 201 PGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQ 259
Query: 434 PKEVKKLAEDYLGD--YIQIN 490
K+VK LA L D YI ++
Sbjct: 260 TKKVKDLARLSLRDPEYISVH 280
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 134
+TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 116 RTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/85 (37%), Positives = 47/85 (55%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR++D L K T L VLDE D ML GF Q+ +I + + Q L++SAT
Sbjct: 243 TPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATIS 301
Query: 437 KEVKKLAEDYLGDYIQINIGSLQLP 511
+EV+K+ + I ++IG+ P
Sbjct: 302 REVEKVGGSLAKEIILVSIGNPNKP 326
Score = 57.6 bits (133), Expect = 8e-09
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 176
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 177 RNTCVFGGAPKREQARDLERGVEIVI 254
+ V GG P Q +++GVE++I
Sbjct: 216 KTALVVGGDPMSGQLYRIQQGVELII 241
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/85 (37%), Positives = 47/85 (55%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 436
TPGR++D L K T L VLDE D ML GF Q+ +I + + Q L++SAT
Sbjct: 106 TPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATIS 164
Query: 437 KEVKKLAEDYLGDYIQINIGSLQLP 511
+EV+K+ + I ++IG+ P
Sbjct: 165 REVEKVGGSLAKEIILVSIGNPNKP 189
Score = 57.6 bits (133), Expect = 8e-09
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 176
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 177 RNTCVFGGAPKREQARDLERGVEIVI 254
+ V GG P Q +++GVE++I
Sbjct: 79 KTALVVGGDPMSGQLYRIQQGVELII 104
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 233 EGSRNSHSTPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 409
EG+ TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R+
Sbjct: 141 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 200
Query: 410 TLMWSATWPKEVKKLAEDYLGDYIQINIGS 499
T ++SAT + V LA+ L + +++ G+
Sbjct: 201 TGLFSATQTQAVADLAKAGLRNAMEVISGA 230
Score = 46.8 bits (106), Expect = 2e-05
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 173
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 174 VRNTCVFGGAPKREQARDL-ERGVEIVI 254
V + + GG L E G ++I
Sbjct: 120 VNSVLLVGGREVEADMNTLEEEGANLLI 147
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 227 LGEGSRNSHSTPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 403
L +G +TPGRL+D LE + + +LV+DEADR+L+ FE ++KI+ +
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKT 332
Query: 404 RQTLMWSATWPKEVKKLAEDYLGDYIQINI 493
RQT ++SAT +V+ LA L + I++
Sbjct: 333 RQTSLFSATQSAKVEDLARVSLTSPVYIDV 362
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSYV 176
+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA + H+ V
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTV 257
Query: 177 RNTCVFGGAPKREQARDLERGVEIVI 254
V GG ++ +A L +GV +++
Sbjct: 258 GK--VIGGEKRKTEAEILAKGVNLLV 281
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +2
Query: 254 STPGRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 430
+TPGR+ID L + +L L+LDEADR+L GF +I +++ RQT+++SAT
Sbjct: 294 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 353
Query: 431 WPKEVKKLAE 460
+EVK+L +
Sbjct: 354 MTEEVKELVK 363
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 185
TGSGKT A+ LP + + +P +R L+L PTRELA QI + + + ++
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCG 270
Query: 186 CVFGGAPKREQARDLERGVEIVI 254
+ GG REQ L +IV+
Sbjct: 271 LIVGGLSVREQEVVLRSMPDIVV 293
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 179
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 180 NTCVFGGAPKREQARDLERGVEIVI 254
V GG K ++ L +G+ I+I
Sbjct: 136 PGYVMGGEKKAKEKARLRKGISILI 160
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 58.8 bits (136), Expect = 4e-09
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 424
+TPGRL D ++ + T L LVLDEAD +LDMGF +I +II + RQT ++S
Sbjct: 214 ATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFS 273
Query: 425 ATWPKEVKKL 454
AT EV+++
Sbjct: 274 ATVSDEVRQI 283
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 134
+TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 125 KTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = +2
Query: 182 HVCVWWCS*KRASPGLGEGSRNSHSTPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 361
H CV S + L G TPGR+ D L++ + VLDEAD ML GF
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGF 198
Query: 362 EPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--GSLQLPQITTFF 529
+ QI I + + P Q ++SAT P E ++ ++ ++I + L L I F+
Sbjct: 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFY 256
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +3
Query: 96 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 254
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVV 162
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 619 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
+++IFV T+RK + ++ +R HGD Q RD ++ +F
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 324
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 170
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA 216
Query: 171 YVRNTCVFGGAPKREQARDLERGVEIVI 254
R+ V GG+ R Q L +++V+
Sbjct: 217 RFRSILVSGGSRIRPQEDSLNNAIDMVV 244
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP------DR--QT 412
TPGR++ +E+G YLVLDEAD M D GF P+IRK + + D+ QT
Sbjct: 246 TPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQT 305
Query: 413 LMWSATWPKEVKKLAED 463
++ +AT V+KL ++
Sbjct: 306 VLVTATMTMAVQKLVDE 322
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 562 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEV 741
E+KL LLQ + S G+K ++F T + + + V HG+ ++R E
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 742 LYQF 753
L +F
Sbjct: 413 LKKF 416
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +2
Query: 254 STPGRLIDFL-EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 430
+TPGRL+ L E L+ Y+V DEAD + MGF Q+ +I+ Q+ +RQTL++SAT
Sbjct: 154 ATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSAT 213
Query: 431 WPKEVKKLAE 460
P + + A+
Sbjct: 214 LPSALAEFAK 223
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/84 (33%), Positives = 51/84 (60%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
+ + GG +Q +L +G +++I
Sbjct: 130 SLLVGGDSMEDQFEELTKGPDVII 153
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +2
Query: 233 EGSRNSHSTPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 409
EG+ TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R+
Sbjct: 134 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 193
Query: 410 TLMWSATWPKEVKKLAE 460
T ++SAT + V LA+
Sbjct: 194 TGLFSATQTQAVADLAK 210
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 149
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 58.0 bits (134), Expect = 6e-09
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +2
Query: 227 LGEGSRNSHSTPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 403
+ GS +TPGRL+D L+ + + LV+DEADR+L+ FE + KI++ +
Sbjct: 208 IASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKT 267
Query: 404 RQTLMWSATWPKEVKKLAEDYLGDYIQINI 493
RQT ++SAT +VK LA L + +++
Sbjct: 268 RQTALFSATQTSKVKDLARVSLTSPVHVDV 297
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 179
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQT 191
Query: 180 NTCVFGGAPKREQARDLERGVEIVI 254
+ V GG +R +A+ + G +VI
Sbjct: 192 VSMVIGGNNRRSEAQRIASGSNLVI 216
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 56.4 bits (130), Expect = 2e-08
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Frame = +2
Query: 182 HVCVWWCS*KRASPGLGEGSRNSHSTPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 361
H CV S + L G TPGR+ D L + + VLDEAD ML GF
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGF 198
Query: 362 EPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--GSLQLPQITTFF 529
+ QI I + + P Q ++SAT P E ++ ++ ++I + L L I F+
Sbjct: 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFY 256
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +3
Query: 96 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 254
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVV 162
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 619 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
+++IFV T+RK + ++ +R HGD Q RD ++ +F
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 324
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTN---LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 424
+TPGR+ LE R +LVLDEADR+LD+GF+ ++R I + + RQTL++S
Sbjct: 182 TTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFS 241
Query: 425 ATWPKEVKKLAE 460
AT ++ L E
Sbjct: 242 ATMTSNLQALLE 253
Score = 46.4 bits (105), Expect = 2e-05
Identities = 33/84 (39%), Positives = 42/84 (50%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 182
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 183 TCVFGGAPKREQARDLERGVEIVI 254
+ + GG Q L IVI
Sbjct: 158 SVIVGGMDMLTQTMSLVSRPHIVI 181
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 170
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 171 Y-VRNTCVFGGAPKREQARDLERGVEIVI 254
R+ V GG +R Q +LE+GV+++I
Sbjct: 479 VPFRSMVVTGGFRQRTQLENLEQGVDVLI 507
Score = 35.1 bits (77), Expect = 0.050
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIEQIRPDRQTLMWSAT 430
+TPGR + +G L +LDE D + D FE ++ +I Q L +AT
Sbjct: 508 ATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTAT 567
Query: 431 WPKEV-KKLAE 460
P E+ KL E
Sbjct: 568 LPLEIYNKLVE 578
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 562 ENKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRR 681
+NK LLQ + + P +KTIIF +ET RK ENI + + R
Sbjct: 620 QNKKTALLQIM--EENPVSKTIIFCNKIETCRKVENIFKRVDR 660
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 52.4 bits (120), Expect = 3e-07
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +2
Query: 188 CVWWCS*KRASPGLGEGSRNSHSTPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 367
CV S + L G TPGR+ D L + + VLDEAD ML GF+
Sbjct: 143 CVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKD 202
Query: 368 QIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--GSLQLPQITTFF 529
QI I + + Q ++SAT P E ++ ++ ++I + L L I F+
Sbjct: 203 QIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY 258
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +3
Query: 96 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 254
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVV 164
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 619 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 753
+++IFV T+RK + ++ +R HGD Q RD ++ +F
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 326
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/80 (27%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATW 433
TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+SAT
Sbjct: 173 TPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232
Query: 434 PKEVKKLAEDYLGDYIQINI 493
KE++ + + ++ D ++I +
Sbjct: 233 SKEIRPVCKKFMQDPMEIYV 252
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +1
Query: 517 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 696
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 261 HGLVQHYIKLSEMEKNRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 697 VCMHGDKTQQER 732
+C+H +Q+ER
Sbjct: 316 ICIHSGMSQEER 327
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 137
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/80 (27%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATW 433
TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+SAT
Sbjct: 90 TPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 149
Query: 434 PKEVKKLAEDYLGDYIQINI 493
KE++ + + ++ D ++I +
Sbjct: 150 SKEIRPVCKKFMQDPMEIYV 169
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +1
Query: 517 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 696
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 178 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 232
Query: 697 VCMHGDKTQQER 732
+C+H +Q+ER
Sbjct: 233 ICIHSGMSQEER 244
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 137
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 8 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/80 (27%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATW 433
TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+SAT
Sbjct: 173 TPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232
Query: 434 PKEVKKLAEDYLGDYIQINI 493
KE++ + + ++ D ++I +
Sbjct: 233 SKEIRPVCKKFMQDPMEIYV 252
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +1
Query: 517 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 696
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 261 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 697 VCMHGDKTQQER 732
+C+H +Q+ER
Sbjct: 316 ICIHSGMSQEER 327
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 137
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/66 (30%), Positives = 43/66 (65%)
Frame = +1
Query: 556 EKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERD 735
+++NK+ V+ +I + + G +TIIFV+TK A+ + + + G+ +HG+ T+ +RD
Sbjct: 322 KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRD 380
Query: 736 EVLYQF 753
+++ +F
Sbjct: 381 KIVKEF 386
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEP---QIRKIIEQIRPDRQTLMWS 424
TPG L ++ L LV DEAD ML GF +I K I ++ P+ Q L++S
Sbjct: 221 TPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFS 280
Query: 425 ATWPKEVK 448
AT+ + VK
Sbjct: 281 ATFNETVK 288
Score = 34.3 bits (75), Expect = 0.088
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 9 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 161
GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSAT 430
STP RL ++ +L + YLVLDE+D++ + QI +++ P ++SAT
Sbjct: 264 STPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSAT 323
Query: 431 WPKEVKKLAEDYLGDYIQINIG 496
P V++LA + D +++ IG
Sbjct: 324 LPDSVEELARSIMHDAVRVIIG 345
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 134
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 559 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 738
+E KL L Q +S P +IFV++K +A+ + ++ A +H D ER+
Sbjct: 364 EEGKLLALRQSFAESLNP--PVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGEREN 421
Query: 739 VLYQF 753
+ QF
Sbjct: 422 AVDQF 426
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Frame = +2
Query: 257 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-------------- 394
TPGR+ + + G + C +LVLDE D +L F I +I+E +
Sbjct: 250 TPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDE 309
Query: 395 RPDRQTLMWSATWPKEVKKLAEDY 466
R +RQT++ SAT P V + A+ +
Sbjct: 310 RANRQTILVSATVPFSVIRAAKSW 333
Score = 35.5 bits (78), Expect = 0.038
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADF 158
TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
Query: 159 GHTSYVRNTCVFGGAPKREQARDLERGVEIVIL 257
G + GGA + Q L++ +++
Sbjct: 216 GPVHRRMVQQLVGGANRMRQEEALKKNKPAIVV 248
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 137
+TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 91 KTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 320 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 493
LVLDEAD +L G+E +R + I Q L+ SAT +V+KL + L + I + +
Sbjct: 204 LVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL 261
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 6 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 146
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 254 STPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 427
+TPGRL+D + KG T L+ YLV+DE DR+L ++ + +++ + +L S
Sbjct: 171 ATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSF 229
Query: 428 T 430
T
Sbjct: 230 T 230
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 149
QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.1 bits (82), Expect = 0.012
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Frame = +3
Query: 3 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 137
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 138 QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 254
+ + V+ + GG +Q R L+ EIV+
Sbjct: 296 TEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVV 334
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +2
Query: 254 STPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 388
+TPGRL + + EK L ++ VLDEADRM++ G +++ I++
Sbjct: 335 ATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +1
Query: 535 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 714
VD+ + + +K+ LL+E+ + G+K+I+F + + + + R + V + G
Sbjct: 853 VDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGT 912
Query: 715 KTQQERDEVLYQF 753
+QQ+R++VL +F
Sbjct: 913 LSQQQREKVLKEF 925
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 35.9 bits (79), Expect = 0.029
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 STPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 421
STP L++ +E K L+ RC Y+V DEAD +L F+ QI ++I +R D
Sbjct: 215 STPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE----- 269
Query: 422 SATWPKEVKKLAEDYLGDYIQINIGSLQL 508
K+V +LA+ LG ++I+ Q+
Sbjct: 270 -----KQVSRLAKSNLGRPMEIDASVPQI 293
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/73 (20%), Positives = 37/73 (50%)
Frame = +2
Query: 254 STPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 433
+TP RL++ + ++ + LV+DE + G+ ++ I + I QT++++ ++
Sbjct: 252 ATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSF 311
Query: 434 PKEVKKLAEDYLG 472
+ + +LG
Sbjct: 312 SASIIPAVQSFLG 324
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/75 (24%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +1
Query: 535 VDICQEHEKENKLNVLLQEIGQSQEPGA--KTIIFVETKRKAENISRNIRRYGWPAVCMH 708
VD+ + ++ +K++ LL+ + + ++ G+ K+I+F + + + +RR G+ +
Sbjct: 1099 VDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFD 1158
Query: 709 GDKTQQERDEVLYQF 753
G Q+ R++VL +F
Sbjct: 1159 GKLAQKGREKVLKEF 1173
>At4g08250.1 68417.m01361 scarecrow transcription factor family
protein SCARECROW - Arabidopsis thaliana, PID:g1497987
Length = 483
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 242 RNSHSTPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 391
R SH TP +I FL + T + LV +E M + GF + ++ Q
Sbjct: 318 RFSHQTPSSVISFLSEAKTLNPKLVTLVHEEVGLMGNQGFLYRFMDLLHQ 367
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 290 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 406
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 290 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 406
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 136 ICCANSLVGAKTKAIGPSPLRI 71
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 341 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 475
++L MG+ + ++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,341,550
Number of Sequences: 28952
Number of extensions: 369511
Number of successful extensions: 1281
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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