Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0452
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 130 2e-31
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 30 0.30
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 27 2.1
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 6.5
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 6.5
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 8.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 8.7
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 8.7
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 130 bits (313), Expect = 2e-31
Identities = 57/97 (58%), Positives = 73/97 (75%)
Frame = +3
Query: 258 MYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGD 437
MYGG RG++ L+WE SVLD +EGIRFRG +IPECQ+ LP + G++PLPE LFWLLVTG+
Sbjct: 77 MYGGARGVRSLIWEGSVLDPNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTGE 136
Query: 438 IPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIP 548
IPT +Q +ALS +WAAR++LP V + CP P
Sbjct: 137 IPTLSQVQALSADWAARSQLPKFVEELIDRCPPTLHP 173
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 515 MLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
+++ P LHPM+QFS AVTAL +S FAKA
Sbjct: 163 LIDRCPPTLHPMAQFSLAVTALEHDSAFAKA 193
Score = 31.5 bits (68), Expect = 0.100
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 136 SAEQTNLKSILQEKIPKEQEKIREFRKKHG 225
S ++LK L E IP++Q +I++FR +HG
Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHG 65
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 29.9 bits (64), Expect = 0.30
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 322 SSASSTEVSQTRPLIPRMPPYII---QL*PLRL*WNHASFGIRGSSLVPWESFPGEYFLN 152
SS SST L +PP I + PL N+ S G+RG ++ + +PG
Sbjct: 560 SSCSSTPKPFNSKLRAHLPPLSIGSPAVQPLAND-NYDSLGVRGLNMELFNDYPGNMHNI 618
Query: 151 SSVQRLDLEVELSQSD 104
SV L++++ L + D
Sbjct: 619 KSVLSLEIDIVLGEMD 634
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 336 RGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIP 443
+G +PE + LP G P G+FWL TG+ P
Sbjct: 377 KGRPVPEAR--LPSMMIGCIVFPIGIFWLAWTGNYP 410
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 333 NGFLHRHPAQRFPKPDL*FHACHRTSFNCDLSDF 232
+ LHRH R P+ H C TS CD+S +
Sbjct: 151 SSLLHRHT--RLPRDVRRKHTCFHTSVWCDMSSY 182
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 139 AEQTNLKSILQEKIPKEQEKIREFRKKHG 225
AEQ I KIP E K+RE+ +++G
Sbjct: 33 AEQKEKDRIKALKIPYEDSKVREYLRRYG 61
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREF 210
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 172 PGEYFLNSSVQRLDLEVELSQSDMLSA 92
P E + N VQ+ DLE EL + D+L+A
Sbjct: 1069 PSEMYRNHLVQKADLEKELPE-DVLNA 1094
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 118 VLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKH 222
V+L A + S +E IPK++ E RKKH
Sbjct: 235 VILGEDEAMEEEALSEAEENIPKKKPDFNELRKKH 269
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 200 SANSERSMVPLKSERSQLNDVRWHAWNQRSGLGNLCA 310
++N ++S++ + + S LN VRW NQ+S N A
Sbjct: 251 TSNKKKSLITINNV-SPLNCVRWRPANQQSRGSNQLA 286
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 133 LSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 234
++ E ++ I+Q K KE++KIR GS+K
Sbjct: 353 VAVELLDVNEIMQTKREKEEKKIRRNLSLSGSSK 386
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 170 WRI-LFKFVCSALRPRSRTVAVGHAFCNSTSLED--VILNRAIFKAAERKLPHKSRQL 6
W++ + +C + + RT A F + TS D + +++ ERKL K+ +L
Sbjct: 5 WKLPVNHLLCHSFKSIPRTSAYAVRFAHHTSNNDDLEVKKNTVYERYERKLKSKAEEL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,901
Number of Sequences: 5004
Number of extensions: 44716
Number of successful extensions: 183
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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