Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0452
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 126 1e-29
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 124 7e-29
09_06_0002 + 20121846-20123308,20123420-20123426 28 6.7
05_04_0025 - 17278869-17279386,17279485-17279602,17279806-172800... 28 6.7
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 27 8.8
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 126 bits (304), Expect = 1e-29
Identities = 58/98 (59%), Positives = 71/98 (72%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
M+ GGMRG+ G++WETS+LD DEGIRFRGLSIPECQ+ LP A EPLPEGL WLL+TG
Sbjct: 74 MVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTG 133
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIP 548
+PT+ Q ALSKE A+R+ +P HV + P P
Sbjct: 134 KVPTKEQVDALSKELASRSSVPGHVYEAIDALPVTAHP 171
Score = 34.7 bits (76), Expect = 0.058
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +1
Query: 136 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 234
SA +LKS LQE IP++Q+++++ + +HG +
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQ 66
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 476 MGSEGGATGSRVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
+ S G ++ +P HPM+QF+ V AL ES+F KA
Sbjct: 148 LASRSSVPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQKA 191
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 124 bits (298), Expect = 7e-29
Identities = 57/98 (58%), Positives = 70/98 (71%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
M+ GGMRG+ G++WETS+LD +EGIRFRGLSIPECQ+ LP A G EPLPEGL WLL+TG
Sbjct: 74 MVLGGMRGMIGMLWETSLLDPEEGIRFRGLSIPECQKVLPTAIKGGEPLPEGLLWLLLTG 133
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIP 548
+PT+ Q ALSKE R+ +P HV + P P
Sbjct: 134 KVPTKEQVDALSKELVTRSSVPGHVYKAIDALPVTAHP 171
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 136 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 234
S +LKS LQE IP++Q+++++ + +HG +
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQ 66
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 518 LNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
++ +P HPM+QF+ V AL ES+F KA
Sbjct: 162 IDALPVTAHPMTQFTTGVMALQVESEFQKA 191
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 304 LCWMPMKESVSVVYPSLSANSNCPRLRVEKNHYPK--VFSGFSS 429
+C P+++S S+ +PS S+++NC + +PK V GFS+
Sbjct: 228 VCLSPLQQS-SLAHPSPSSSTNCSLWMTKSAIFPKEVVTRGFSA 270
>05_04_0025 -
17278869-17279386,17279485-17279602,17279806-17280059,
17280095-17280205,17280374-17280513,17280583-17280641,
17280712-17280897,17280965-17281089,17281282-17281581,
17281742-17281841
Length = 636
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 164 FSRKRFPRNKRRSANSE---RSMVPLKSERSQLNDVRWHAW 277
F + F R++R A + RSM+PL + Q D RW +W
Sbjct: 596 FLHEGFARSRRTPAEIDHLARSMLPLAEKIFQSMDWRWPSW 636
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -1
Query: 360 GTQGWID---HGNGFLHRHPAQRFPKPDL*FHACHRTSFNCDLSDFS 229
G QGW HGN + RH +RF K L F A T L+D S
Sbjct: 294 GGQGWNSTSLHGNADVRRHAKRRFDK--LNFTALASTPMYLQLADSS 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,110,528
Number of Sequences: 37544
Number of extensions: 324465
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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