Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0452
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   1e-19
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   1.7  
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_40644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)           29   3.9  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   28   5.1  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   5.1  
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             28   6.8  
SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    28   6.8  

>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 49/82 (59%), Positives = 58/82 (70%)
 Frame = +3

Query: 270 MRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTE 449
           MRGIKGLV ETS+LD +E               LPKA GG+EPLPEG+FWLL+TG+IPT+
Sbjct: 1   MRGIKGLVTETSLLDPEE--------------LLPKADGGKEPLPEGIFWLLMTGEIPTK 46

Query: 450 AQAKALSKEWAARAELPAHV*Q 515
            Q   LSKEWAA+A+LP HV Q
Sbjct: 47  QQVDNLSKEWAAKADLPQHVVQ 68



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
           V MLNN P  LHPMSQFSAA+TA+N+ESKF +A
Sbjct: 67  VQMLNNFPDTLHPMSQFSAAITAMNTESKFVQA 99


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 382 RVEKNH----YPKVFSGFSSLAIYPPKRKLKRCLKNGQRGRSYRLTCDNVEQYARQTASH 549
           +V  NH    +P V SG + +A   P+         G+ GR + L+   +EQY  Q + +
Sbjct: 187 KVNNNHPLADFPSVLSG-THIAFLDPQETF---FGTGETGRRFNLSEPLLEQYPDQFSPY 242

Query: 550 VTVLGCR 570
             VLGC+
Sbjct: 243 ENVLGCK 249


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 300 TSVLDADEGIRFRGLSIPECQQQLPKAKGG 389
           +S+ DA   IRF  LS+PE + + PK+  G
Sbjct: 872 SSIFDALRNIRFPRLSLPELEGRFPKSSPG 901


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 127 RGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 234
           RGL  E+ +L+ +LQE   K   + +E ++ HG  K
Sbjct: 544 RGLKVEKEDLERVLQEAGEKVASQQKELKEAHGQRK 579


>SB_40644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 411 LFWLLVTGDIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHS 581
           + W  +   +    Q + L +E   RA LP    +    CPA  +   SSR+P+PH+
Sbjct: 73  MLWKTILASLGGIKQIEVLKREARVRAGLPPTYEEQ---CPAPPLAGRSSRVPTPHT 126


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 337 RKRIPSSASSTEVSQTRPLIPRMPPYIIQL*PLRL*WNHASFGIRG--SSLVPW 182
           R+  PSS +S       P +PR+    I + PLR  WN + F +R   SSL  W
Sbjct: 599 RRMPPSSLNSCLGLDQPPHLPRLRT-CISVFPLRSDWNRSRFSLRSGYSSLRDW 651


>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
          Length = 976

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 157 KSILQEKIPKEQEKIREFRKKHGSTK 234
           K +++EK P E++K  E +KKH S K
Sbjct: 109 KKVIKEKDPSEKKKDGESKKKHRSEK 134


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 349 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYII 254
           M  P + + ++A+ TE++ T+PL+P  P  ++
Sbjct: 366 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLV 397


>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 282 KGLVWETSVLDADEGIRFRGLSIPECQQQL 371
           +GL W+ S  D D    FRGL+IP C  ++
Sbjct: 178 RGLPWQAS--DQDVANFFRGLNIPSCVSRM 205


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 349 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYII 254
           M  P + + ++A+ TE++ T+PL+P  P  ++
Sbjct: 118 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLV 149


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 58  LFRITSSRLVELQKACPTA-TVLLRGLSAEQTNLKSILQEKIPKEQEKIR 204
           L +    R+ EL+ A   A + +  G+ A++ + K++  EKI KE+EK++
Sbjct: 297 LIQTLQKRIKELESAGTQAGSKIDTGMGAKRKDSKAVDPEKIAKEKEKLQ 346


>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 264

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 176 FSWRILFKFVC----SALRPRSRTVAVGHAFCNSTSLEDVIL 63
           F W +L  FV     S + PRSR    G   C STS+  ++L
Sbjct: 135 FDWMLLTCFVIDKLESMITPRSRAAWAGLMKCPSTSISGIML 176


>SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 28  SLRSAALKMALFRITSSRLVELQKACPTATVLLR 129
           SLR A+ ++   RI S  +V L+KA     +LLR
Sbjct: 33  SLRKASERVVNLRIASESMVNLRKASERMVILLR 66


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 351 PECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAAR 488
           P C+  LPK +G    +P G  W+LV G+   +A  K+    W ++
Sbjct: 568 PACRM-LPK-EGEPISIPNGTPWILVEGNSAIQANPKSKINCWISK 611


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,160,958
Number of Sequences: 59808
Number of extensions: 351313
Number of successful extensions: 1145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)