Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0452
(609 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC072016-1|AAH72016.1| 466|Homo sapiens citrate synthase protein. 155 1e-37
BC010106-1|AAH10106.1| 466|Homo sapiens CS protein protein. 155 1e-37
BC000105-1|AAH00105.3| 409|Homo sapiens CS protein protein. 155 1e-37
AK074956-1|BAC11314.1| 466|Homo sapiens protein ( Homo sapiens ... 155 1e-37
AF053631-1|AAQ13428.1| 466|Homo sapiens citrate synthase protein. 155 1e-37
AF047042-1|AAC25560.1| 466|Homo sapiens citrate synthase protein. 154 2e-37
BX538112-1|CAD98024.1| 690|Homo sapiens hypothetical protein pr... 33 0.60
BC101722-1|AAI01723.1| 690|Homo sapiens highly divergent homeob... 33 0.60
BC101720-1|AAI01721.1| 690|Homo sapiens highly divergent homeob... 33 0.60
AL035552-2|CAI42056.1| 632|Homo sapiens chromosome X open readi... 33 0.60
AL022160-2|CAI42096.1| 632|Homo sapiens chromosome X open readi... 33 0.60
AK055240-1|BAB70886.1| 632|Homo sapiens protein ( Homo sapiens ... 33 0.60
BC107163-1|AAI07164.1| 551|Homo sapiens hypothetical protein FL... 33 0.79
BC107162-1|AAI07163.1| 551|Homo sapiens hypothetical protein FL... 33 0.79
AK023367-1|BAB14544.1| 436|Homo sapiens protein ( Homo sapiens ... 33 0.79
BC025238-1|AAH25238.1| 120|Homo sapiens family with sequence si... 31 2.4
BC011054-1|AAH11054.1| 120|Homo sapiens family with sequence si... 31 2.4
AK074755-1|BAC11183.1| 120|Homo sapiens protein ( Homo sapiens ... 31 2.4
AK027681-1|BAB55292.1| 120|Homo sapiens protein ( Homo sapiens ... 31 2.4
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein. 31 2.4
AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein. 31 2.4
D32257-1|BAA06988.1| 423|Homo sapiens Xenopus transcription fac... 31 3.2
X85786-1|CAA59771.1| 616|Homo sapiens binding regulatory factor... 30 5.5
BC017471-1|AAH17471.1| 616|Homo sapiens regulatory factor X, 5 ... 30 5.5
AL391069-15|CAM13081.1| 596|Homo sapiens regulatory factor X, 5... 30 5.5
AL391069-14|CAH70327.1| 616|Homo sapiens regulatory factor X, 5... 30 5.5
AK223526-1|BAD97246.1| 616|Homo sapiens regulatory factor X, 5 ... 30 5.5
EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel prot... 30 7.3
EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel prot... 30 7.3
DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein ... 30 7.3
AF263523-1|AAG28029.1| 871|Homo sapiens vanilloid receptor-rela... 29 9.7
>BC072016-1|AAH72016.1| 466|Homo sapiens citrate synthase protein.
Length = 466
Score = 155 bits (376), Expect = 1e-37
Identities = 78/115 (67%), Positives = 86/115 (74%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
MMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPEGLFWLLVTG
Sbjct: 67 MMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTG 126
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHSTVNLNS 599
IPTE Q LSKEWA RA LP+HV P N P S+L + + +N S
Sbjct: 127 HIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP--MSQLSAAVTALNSES 179
Score = 55.2 bits (127), Expect = 2e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
VTML+N P LHPMSQ SAAVTALNSES FA+A
Sbjct: 152 VTMLDNFPTNLHPMSQLSAAVTALNSESNFARA 184
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +1
Query: 52 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 231
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>BC010106-1|AAH10106.1| 466|Homo sapiens CS protein protein.
Length = 466
Score = 155 bits (376), Expect = 1e-37
Identities = 78/115 (67%), Positives = 86/115 (74%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
MMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPEGLFWLLVTG
Sbjct: 67 MMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTG 126
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHSTVNLNS 599
IPTE Q LSKEWA RA LP+HV P N P S+L + + +N S
Sbjct: 127 HIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP--MSQLSAAVTALNSES 179
Score = 55.2 bits (127), Expect = 2e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
VTML+N P LHPMSQ SAAVTALNSES FA+A
Sbjct: 152 VTMLDNFPTNLHPMSQLSAAVTALNSESNFARA 184
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +1
Query: 52 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 231
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>BC000105-1|AAH00105.3| 409|Homo sapiens CS protein protein.
Length = 409
Score = 155 bits (376), Expect = 1e-37
Identities = 78/115 (67%), Positives = 86/115 (74%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
MMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPEGLFWLLVTG
Sbjct: 10 MMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTG 69
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHSTVNLNS 599
IPTE Q LSKEWA RA LP+HV P N P S+L + + +N S
Sbjct: 70 HIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP--MSQLSAAVTALNSES 122
Score = 55.2 bits (127), Expect = 2e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
VTML+N P LHPMSQ SAAVTALNSES FA+A
Sbjct: 95 VTMLDNFPTNLHPMSQLSAAVTALNSESNFARA 127
>AK074956-1|BAC11314.1| 466|Homo sapiens protein ( Homo sapiens
cDNA FLJ90475 fis, clone NT2RP3002721, highly similar to
Porcine citrate synthase mRNA. ).
Length = 466
Score = 155 bits (376), Expect = 1e-37
Identities = 78/115 (67%), Positives = 86/115 (74%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
MMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPEGLFWLLVTG
Sbjct: 67 MMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTG 126
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHSTVNLNS 599
IPTE Q LSKEWA RA LP+HV P N P S+L + + +N S
Sbjct: 127 HIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP--MSQLSAAVTALNSES 179
Score = 55.2 bits (127), Expect = 2e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
VTML+N P LHPMSQ SAAVTALNSES FA+A
Sbjct: 152 VTMLDNFPTNLHPMSQLSAAVTALNSESNFARA 184
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +1
Query: 52 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 231
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>AF053631-1|AAQ13428.1| 466|Homo sapiens citrate synthase protein.
Length = 466
Score = 155 bits (376), Expect = 1e-37
Identities = 78/115 (67%), Positives = 86/115 (74%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
MMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPEGLFWLLVTG
Sbjct: 67 MMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTG 126
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHSTVNLNS 599
IPTE Q LSKEWA RA LP+HV P N P S+L + + +N S
Sbjct: 127 HIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP--MSQLSAAVTALNSES 179
Score = 55.2 bits (127), Expect = 2e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
VTML+N P LHPMSQ SAAVTALNSES FA+A
Sbjct: 152 VTMLDNFPTNLHPMSQLSAAVTALNSESNFARA 184
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +1
Query: 52 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 231
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>AF047042-1|AAC25560.1| 466|Homo sapiens citrate synthase protein.
Length = 466
Score = 154 bits (374), Expect = 2e-37
Identities = 78/115 (67%), Positives = 86/115 (74%)
Frame = +3
Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
MMYGGMRG+KGLV+ETSVLD DEGIRFRG SIPECQ+ LPKAKGGEEPLPEGLFWLLVTG
Sbjct: 67 MMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTG 126
Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHSTVNLNS 599
IPTE Q LSKEWA RA LP+HV P N P S+L + + +N S
Sbjct: 127 CIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP--MSQLSAAVTALNSES 179
Score = 54.8 bits (126), Expect = 2e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
VTML+N P LHPMSQ SAAVTALNSES FA+A
Sbjct: 152 VTMLDNFPTNLHPMSQLSAAVTALNSESNFAQA 184
Score = 45.2 bits (102), Expect = 2e-04
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +1
Query: 52 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 231
MAL + L +C + R SA TNLK IL + IPKEQ +I+ FR++HG T
Sbjct: 1 MALLTAAARLLGTKNASC--LVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKT 58
>BX538112-1|CAD98024.1| 690|Homo sapiens hypothetical protein
protein.
Length = 690
Score = 33.5 bits (73), Expect = 0.60
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 319 SASSTEVSQTRPLIPRMPPYIIQL*PLRL*WNHASFGIRGSSLVPW 182
+ASST S T PL P+ LRL N ++ I G+ VPW
Sbjct: 381 TASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPW 426
>BC101722-1|AAI01723.1| 690|Homo sapiens highly divergent homeobox
protein.
Length = 690
Score = 33.5 bits (73), Expect = 0.60
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 319 SASSTEVSQTRPLIPRMPPYIIQL*PLRL*WNHASFGIRGSSLVPW 182
+ASST S T PL P+ LRL N ++ I G+ VPW
Sbjct: 381 TASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPW 426
>BC101720-1|AAI01721.1| 690|Homo sapiens highly divergent homeobox
protein.
Length = 690
Score = 33.5 bits (73), Expect = 0.60
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 319 SASSTEVSQTRPLIPRMPPYIIQL*PLRL*WNHASFGIRGSSLVPW 182
+ASST S T PL P+ LRL N ++ I G+ VPW
Sbjct: 381 TASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPW 426
>AL035552-2|CAI42056.1| 632|Homo sapiens chromosome X open reading
frame 43 protein.
Length = 632
Score = 33.5 bits (73), Expect = 0.60
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 319 SASSTEVSQTRPLIPRMPPYIIQL*PLRL*WNHASFGIRGSSLVPW 182
+ASST S T PL P+ LRL N ++ I G+ VPW
Sbjct: 323 TASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPW 368
>AL022160-2|CAI42096.1| 632|Homo sapiens chromosome X open reading
frame 43 protein.
Length = 632
Score = 33.5 bits (73), Expect = 0.60
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 319 SASSTEVSQTRPLIPRMPPYIIQL*PLRL*WNHASFGIRGSSLVPW 182
+ASST S T PL P+ LRL N ++ I G+ VPW
Sbjct: 323 TASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPW 368
>AK055240-1|BAB70886.1| 632|Homo sapiens protein ( Homo sapiens
cDNA FLJ30678 fis, clone FCBBF2000094. ).
Length = 632
Score = 33.5 bits (73), Expect = 0.60
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 319 SASSTEVSQTRPLIPRMPPYIIQL*PLRL*WNHASFGIRGSSLVPW 182
+ASST S T PL P+ LRL N ++ I G+ VPW
Sbjct: 323 TASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPW 368
>BC107163-1|AAI07164.1| 551|Homo sapiens hypothetical protein
FLJ13305 protein.
Length = 551
Score = 33.1 bits (72), Expect = 0.79
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 200 SANSERSMVPLKSERSQLNDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG 379
S E+ + ++++ L + RW + R CAG NP P + +P VPT +++G
Sbjct: 357 SIKREKILADIEADEENLKETRWPYLSPRRKSPVRCAGV---NPVPCNCNPPVPTVSSRG 413
>BC107162-1|AAI07163.1| 551|Homo sapiens hypothetical protein
FLJ13305 protein.
Length = 551
Score = 33.1 bits (72), Expect = 0.79
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 200 SANSERSMVPLKSERSQLNDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG 379
S E+ + ++++ L + RW + R CAG NP P + +P VPT +++G
Sbjct: 357 SIKREKILADIEADEENLKETRWPYLSPRRKSPVRCAGV---NPVPCNCNPPVPTVSSRG 413
>AK023367-1|BAB14544.1| 436|Homo sapiens protein ( Homo sapiens
cDNA FLJ13305 fis, clone OVARC1001399. ).
Length = 436
Score = 33.1 bits (72), Expect = 0.79
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 200 SANSERSMVPLKSERSQLNDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG 379
S E+ + ++++ L + RW + R CAG NP P + +P VPT +++G
Sbjct: 357 SIKREKILADIEADEENLKETRWPYLSPRRKSPVRCAGV---NPVPCNCNPPVPTVSSRG 413
>BC025238-1|AAH25238.1| 120|Homo sapiens family with sequence
similarity 104, member A protein.
Length = 120
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 167 SRKRFPRNKRRSANSERSMVPLKSERSQLNDVRWHAWNQRS 289
S + PR +RR+ N E + +P +++RS N V +W+ S
Sbjct: 2 SERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTES 42
>BC011054-1|AAH11054.1| 120|Homo sapiens family with sequence
similarity 104, member A protein.
Length = 120
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 167 SRKRFPRNKRRSANSERSMVPLKSERSQLNDVRWHAWNQRS 289
S + PR +RR+ N E + +P +++RS N V +W+ S
Sbjct: 2 SERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTES 42
>AK074755-1|BAC11183.1| 120|Homo sapiens protein ( Homo sapiens
cDNA FLJ90274 fis, clone NT2RP1000239. ).
Length = 120
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 167 SRKRFPRNKRRSANSERSMVPLKSERSQLNDVRWHAWNQRS 289
S + PR +RR+ N E + +P +++RS N V +W+ S
Sbjct: 2 SERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTES 42
>AK027681-1|BAB55292.1| 120|Homo sapiens protein ( Homo sapiens
cDNA FLJ14775 fis, clone NT2RP4000185. ).
Length = 120
Score = 31.5 bits (68), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 167 SRKRFPRNKRRSANSERSMVPLKSERSQLNDVRWHAWNQRS 289
S + PR +RR+ N E + +P +++RS N V +W+ S
Sbjct: 2 SERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTES 42
>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
Length = 4169
Score = 31.5 bits (68), Expect = 2.4
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 352 LSANSNCPRLRVEKNHYPKVFSGFSSLAIYPPKRKLKRCLKNGQRGRSYRLTCDNVEQYA 531
L NS+ EK +F+G YP RKLK+ KN G S+ + +NVE +
Sbjct: 3920 LEENSDVTSWSEEKREEKMLFTG------YPEDRKLKKNKKNSHEGVSWFVPVENVESRS 3973
Query: 532 RQ 537
++
Sbjct: 3974 KK 3975
>AB002326-1|BAA20786.3| 2055|Homo sapiens KIAA0328 protein protein.
Length = 2055
Score = 31.5 bits (68), Expect = 2.4
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 352 LSANSNCPRLRVEKNHYPKVFSGFSSLAIYPPKRKLKRCLKNGQRGRSYRLTCDNVEQYA 531
L NS+ EK +F+G YP RKLK+ KN G S+ + +NVE +
Sbjct: 1853 LEENSDVTSWSEEKREEKMLFTG------YPEDRKLKKNKKNSHEGVSWFVPVENVESRS 1906
Query: 532 RQ 537
++
Sbjct: 1907 KK 1908
>D32257-1|BAA06988.1| 423|Homo sapiens Xenopus transcription factor
IIIA homologue protein.
Length = 423
Score = 31.1 bits (67), Expect = 3.2
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 376 RLRVEKNHYPKVFSGFSSLAIYPPKRKLKRCLKNGQRGRS 495
+L+V+K+ + F G SS IYPPKRK + L Q G S
Sbjct: 367 KLKVKKSREKREF-GLSSQWIYPPKRKQGQGLSLCQNGES 405
>X85786-1|CAA59771.1| 616|Homo sapiens binding regulatory factor
protein.
Length = 616
Score = 30.3 bits (65), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 RKRFPRNKRRSANSERSMVPLKS----ERSQLNDVRWHAWNQRSGLGNLCAGCR*RNP 331
RKR K+ + ER+ PLKS E +Q + + W W G GN G P
Sbjct: 464 RKRGRPRKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWGS-GGEGNSAGGAERPGP 520
>BC017471-1|AAH17471.1| 616|Homo sapiens regulatory factor X, 5
(influences HLA class II expression) protein.
Length = 616
Score = 30.3 bits (65), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 RKRFPRNKRRSANSERSMVPLKS----ERSQLNDVRWHAWNQRSGLGNLCAGCR*RNP 331
RKR K+ + ER+ PLKS E +Q + + W W G GN G P
Sbjct: 464 RKRGRPRKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWGS-GGEGNSAGGAERPGP 520
>AL391069-15|CAM13081.1| 596|Homo sapiens regulatory factor X, 5
(influences HLA class II expression) protein.
Length = 596
Score = 30.3 bits (65), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 RKRFPRNKRRSANSERSMVPLKS----ERSQLNDVRWHAWNQRSGLGNLCAGCR*RNP 331
RKR K+ + ER+ PLKS E +Q + + W W G GN G P
Sbjct: 464 RKRGRPRKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWGS-GGEGNSAGGAERPGP 520
>AL391069-14|CAH70327.1| 616|Homo sapiens regulatory factor X, 5
(influences HLA class II expression) protein.
Length = 616
Score = 30.3 bits (65), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 RKRFPRNKRRSANSERSMVPLKS----ERSQLNDVRWHAWNQRSGLGNLCAGCR*RNP 331
RKR K+ + ER+ PLKS E +Q + + W W G GN G P
Sbjct: 464 RKRGRPRKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWGS-GGEGNSAGGAERPGP 520
>AK223526-1|BAD97246.1| 616|Homo sapiens regulatory factor X, 5
variant protein.
Length = 616
Score = 30.3 bits (65), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 RKRFPRNKRRSANSERSMVPLKS----ERSQLNDVRWHAWNQRSGLGNLCAGCR*RNP 331
RKR K+ + ER+ PLKS E +Q + + W W G GN G P
Sbjct: 464 RKRGRPRKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWGS-GGEGNSAGGAERPGP 520
>EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel protein.
Length = 1998
Score = 29.9 bits (64), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 360 QQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEW 479
QQ+ GG E P+ W V+ +EA+A A +W
Sbjct: 1076 QQESQPVSGGPEAPPDSRTWSQVSATASSEAEASASQADW 1115
>EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel protein.
Length = 2016
Score = 29.9 bits (64), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 360 QQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEW 479
QQ+ GG E P+ W V+ +EA+A A +W
Sbjct: 1076 QQESQPVSGGPEAPPDSRTWSQVSATASSEAEASASQADW 1115
>DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein type
V alpha subunit protein.
Length = 2016
Score = 29.9 bits (64), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 360 QQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEW 479
QQ+ GG E P+ W V+ +EA+A A +W
Sbjct: 1076 QQESQPVSGGPEAPPDSRTWSQVSATASSEAEASASQADW 1115
>AF263523-1|AAG28029.1| 871|Homo sapiens vanilloid receptor-related
osmotically activated channel protein.
Length = 871
Score = 29.5 bits (63), Expect = 9.7
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +2
Query: 98 KHVRLRQFYFEV*ALNRRI*KVFSRKRFPRNKRRSANSERSMVPLKSERSQLNDVRWHAW 277
KH+ Q+ + + R VF RK F + + P + ++N+V W W
Sbjct: 730 KHIWKLQWATTILDIERSF-PVFLRKAFRSGEMVTVGKSSDGTPDRRWCFRVNEVNWSHW 788
Query: 278 NQRSGLGN 301
NQ G+ N
Sbjct: 789 NQNLGIIN 796
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,320,504
Number of Sequences: 237096
Number of extensions: 1643883
Number of successful extensions: 4878
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 4732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4875
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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