Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0452
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...   142   1e-34
AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical ...    31   0.64 
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    31   0.64 
AL032646-8|CAA21683.1|  198|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   2.0  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical p...    28   4.5  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL117202-16|CAD91710.1|  121|Caenorhabditis elegans Hypothetical...    27   7.9  
AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    27   7.9  
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    27   7.9  

>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
           protein T20G5.2 protein.
          Length = 468

 Score =  142 bits (345), Expect = 1e-34
 Identities = 62/85 (72%), Positives = 74/85 (87%)
 Frame = +3

Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434
           M+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE ++WLL TG
Sbjct: 69  MIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPEAIWWLLCTG 128

Query: 435 DIPTEAQAKALSKEWAARAELPAHV 509
           D+P+EAQ  A++KEW ARA+LP HV
Sbjct: 129 DVPSEAQTAAITKEWNARADLPTHV 153



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +2

Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607
           V ML+N P  LHPM+QF AA+ ALN+ESKFA A
Sbjct: 154 VRMLDNFPDNLHPMAQFIAAIAALNNESKFAGA 186



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 52  MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 228
           MA+ R+ +  ++ + +  P +T      SAE  TNLK +L +KIP    K++ FR +HGS
Sbjct: 6   MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59

Query: 229 T 231
           T
Sbjct: 60  T 60


>AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8b protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +1

Query: 55  ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 219
           ++F I S+   +  +     TV + G+S    NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +1

Query: 55  ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 219
           ++F I S+   +  +     TV + G+S    NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302


>AL032646-8|CAA21683.1|  198|Caenorhabditis elegans Hypothetical
           protein Y54E2A.9 protein.
          Length = 198

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 460 KRCLKNGQRGRSYRLTCDNVEQYARQTASHVTVLGCRHRTQQ 585
           KRC  +GQ  R  R+  DN + ++ QT  +   L C +R+ Q
Sbjct: 36  KRC-PSGQFVRGLRVKYDNAQYFSDQTGINAIELVCHNRSDQ 76


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 106  PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 219
            PT+T+ L  L   + NL S+  E+  K +EKI + R++
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2461



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 106  PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 219
            PT+T+ L  L   + NL S+  E+  K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 378 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAEL 497
           A G E+PLPE  +W  V+     EA AKA  K     AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 438 IPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHST 584
           +P EAQA   + E A  A++PA   Q   I P N +P  +   P+P +T
Sbjct: 387 VPEEAQAPTPAPEEAPEAQIPAETAQ---IPPENAVP-EAPEEPAPTTT 431


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 438 IPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIPCHSSRLPSPHST 584
           +P EAQA   + E A  A++PA   Q   I P N +P  +   P+P +T
Sbjct: 399 VPEEAQAPTPAPEEAPEAQIPAETAQ---IPPENAVP-EAPEEPAPTTT 443


>Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical
           protein C44C10.11 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 133 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 222
           L+ E  NLK  L++K   E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 143 SALRPRSRTVAVGHAFCNSTSLEDVILNRAIFKAAERKLP-HK 18
           S  R +S+TVA  H +CN+    + +L  AI +  ++K P HK
Sbjct: 34  SGFRRKSKTVAFFHPYCNAGGGGERVLWAAI-RTMQKKFPDHK 75


>AL117202-16|CAD91710.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D3A.20 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 400 YPKVFSGFSSLAIYPPKRKLK 462
           +P++F GFSS+  +PP  K K
Sbjct: 30  FPRLFKGFSSIFHFPPLNKPK 50


>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 197 FSCSLGIFSWRILFKFVCSALRPRSRTV 114
           F CS G+ + +++ K VC+  +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 197 FSCSLGIFSWRILFKFVCSALRPRSRTV 114
           F CS G+ + +++ K VC+  +PR +T+
Sbjct: 209 FFCSAGVGNNKMMAKLVCARHKPRQQTL 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,524
Number of Sequences: 27780
Number of extensions: 254989
Number of successful extensions: 842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)